Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02471 ATGAACGGTGAATACGAAACCCTAGTTGTAATTGATGTGACACAGACCACAGCGCCGCCTCAACATCTCAAAACTCTATCCCTAATCCCTTTCTTCGTCTCTCATCGCTCTGCAAACCCTCGCCTCCGATTTCAGGTGTTGTTGAACCTTCCTGTTGTTGGCTTGGTACCCGTGCAAGTTCTGCCGTGTAGCAGATTCCAAGGTGAAGGTGTCACGTTAAAGTTTCTTTCATGTTTGAACAGGCTACTATCCATTTGGGAGCAACTGAGCTGCTTGGAGAGTATTTTTCTTCCTCTAGAAAAAATTACAGACCCTCACCACAGACAGTTAGCTGTATGCATTGCGAGACATACCAGAAATTCACTCAGTTTTCTGCTTGCGGTTGGCCTCCTTCCATTATCCTTGAAGGAGATTCTTCAAGGGTATAAGATGCCTAGGATGATTACCAAAATTGAGGGTAGAGGTAATGGCATCAAGACTAATGTTGTCAATATGGTTGATATTGCAAAGGCATTGGCGAGGCCGGCATCCTACACAACCAAGTATTTTGGTTGTGAACTTGGGGCCCAGTCAAAATTTGATGAGAAGACCGGCACTTCTCATGTCAATGGAGCGCATGATACTGCAAAGCTTGCCGGCCTTCTGGAGAACTTCATTAAGAAATATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATTACTAAGAACCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTTGACATGCGAGACAAGCTAACTACTTTTATCATTAAGAACCCTCCAGAAGTTAAGAAAGGATCCAAAGACAAGAAGGCTATGAGGAGAGCTGAGAAGGAGAGACTGAAGGAAGGTGAAGCAGCTGACGAGGAACTGAAGAAACTGAAGAAAGAGGTTAAAAAGAAAGGCGCCACATCTTCAAAGGATGTCACTGCTAAATCCACCACTTCAAAGAAGAAAGCAAATGGCTCTGATGAAGACCGCACATCACCTACTCACAGTCAAGTtgatgagaaagaggaggctcatgatgaagatgatgatgatgaCGTGCAATGGCTGACAGATACATCCCTTGATGCTGCTCGTCAACGTATCCAGGAACAGTTAAGTGCTGTGACAGCTGATATGGTTATGCTTTCTACAGATGAACCTGAGAAGAAGAAAAAGGCTGCAAGTAACGGAAATGGTGGTTCTCAGAATGGTAACTCAATGTCCTATGGAACCCTGGTTGGTGAAGTGAAAGCAAATTTGAAGAAAGGTGTTGGGGCGAAGGAATTGATGTCTCATCTTGCAGCACTTACTGTACCTGCTCAAGAAAAGATCAGTGCTCTGGTTGAAGCTCTCTTCGAGGGAACTGAGAAAGGTTTTGCCAAAGAAGCTATTAAGAAGAAGAACTACCTTGCTGCTGCTGTTGGCGAGGAGGGATCCCAGTTGTTATTGCTTAATGCTTTTGAGGAATTTTCTTGCAAGTCTACTTCTAATGCTTTGAAGGAGGTTGCCCTGGTTCTAAAGGCACTCTACGATGCTGATGTTTTGGAGGAAGAGTTCATTGTGCAAATGCAGAATCAGAATCTGAGGAAGAATAATTGTGCTCGTCATTATGGAGAAAGCATAATTTTCCCAGATCATCCGGGAATTACAATAAGATAA 1680 0.425 MNGEYETLVVIDVTQTTAPPQHLKTLSLIPFFVSHRSANPRLRFQVLLNLPVVGLVPVQVLPCSRFQGEGVTLKFLSCLNRLLSIWEQLSCLESIFLPLEKITDPHHRQLAVCIARHTRNSLSFLLAVGLLPLSLKEILQGYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERLKEGEAADEELKKLKKEVKKKGATSSKDVTAKSTTSKKKANGSDEDRTSPTHSQVDEKEEAHDEDDDDDVQWLTDTSLDAARQRIQEQLSAVTADMVMLSTDEPEKKKKAASNGNGGSQNGNSMSYGTLVGEVKANLKKGVGAKELMSHLAALTVPAQEKISALVEALFEGTEKGFAKEAIKKKNYLAAAVGEEGSQLLLLNAFEEFSCKSTSNALKEVALVLKALYDADVLEEEFIVQMQNQNLRKNNCARHYGESIIFPDHPGITIR 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02471 559 SMART eIF2Bneu4 139 253 IPR002735 GO:0003743|GO:0006413
Cca07g02471 559 Coils Coil 291 311 - -
Cca07g02471 559 MobiDBLite consensus disorder prediction 393 413 - -
Cca07g02471 559 MobiDBLite consensus disorder prediction 272 349 - -
Cca07g02471 559 SUPERFAMILY ARM repeat 416 528 IPR016024 -
Cca07g02471 559 Gene3D - 411 542 - -
Cca07g02471 559 SMART 542_3 474 541 IPR003307 GO:0005515
Cca07g02471 559 Gene3D - 229 269 - -
Cca07g02471 559 Pfam Domain found in IF2B/IF5 141 251 IPR002735 GO:0003743|GO:0006413
Cca07g02471 559 Gene3D - 133 228 - -
Cca07g02471 559 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 5-1-RELATED 141 539 - -
Cca07g02471 559 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 222 257 IPR016190 GO:0003743|GO:0006413
Cca07g02471 559 ProSiteProfiles W2 domain profile. 406 559 IPR003307 GO:0005515
Cca07g02471 559 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 140 225 IPR016189 GO:0003743|GO:0006413
Cca07g02471 559 MobiDBLite consensus disorder prediction 271 360 - -
Cca07g02471 559 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 141 539 IPR045196 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02471 Cca-Chr7 53458813 53461568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02471 142 536 Eukaryotic Initiation Factors Gene Family AT1G36730 61.275 3.09e-152 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02471 K03262 - gmx:100777906 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02471 07 53458813 53461568 Cca07g02471 07 53458813 53461568 ECH