Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02470 ATGGATGAGCAAATTAAGTCATCTCCCAGTAGATTGGCAGAATGTCGAATATGCCACGATGAAGATGAAGAATCAAACATGGACACACCTTGTTCGTGTTGTGGGACATTGAAGTATGCGCACCAAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACAACCTGTGAAATTTGCCAACAGCAACTTAAGCCTGGCTATACTGCACATCCACCACCTCTATCCCATTATGGTGGTTCTCCAATAAATCTTGGAGATAACTGGGAGATTTCAAGAAGGGATCTTCATAATCGTCAGTTCATAGCAATGTTTAGTGCTGATCATCATGAATTCCTAGAACTTGACTTGGAGTATTCATCAACACCCTCAAGAAGAAGCATAATATGTTGTCGCATTGTTGCCATTATTtttattgttctacttcttttACGCCATACACTTCCAATCATATTTATACTCAGTGGAGCAGGAGAGTATTCATTGACAATATTTATGTTAATAGTGTTGAGAATCATCAGAATGATTGTACCAGTGTATATAACGACTAAAGCTATTACTGCAATTCAATTGTTTCAATACCAGGGTCATCAGCATTCCCCTGAGCAAGAATATGGAGAAAATGAAATAGGACAACCTCAGTTGCGTGTCATTCATATTCAGTGA 666 0.3769 MDEQIKSSPSRLAECRICHDEDEESNMDTPCSCCGTLKYAHQKCVQRWCNEKGDTTCEICQQQLKPGYTAHPPPLSHYGGSPINLGDNWEISRRDLHNRQFIAMFSADHHEFLELDLEYSSTPSRRSIICCRIVAIIFIVLLLLRHTLPIIFILSGAGEYSLTIFMLIVLRIIRMIVPVYITTKAITAIQLFQYQGHQHSPEQEYGENEIGQPQLRVIHIQ 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02470 221 Pfam RING-variant domain 15 60 IPR011016 GO:0008270
Cca07g02470 221 Pfam Protein of unknown function (DUF3675) 66 186 IPR022143 -
Cca07g02470 221 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 2 204 - -
Cca07g02470 221 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 2 204 IPR033275 -
Cca07g02470 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 70 IPR013083 -
Cca07g02470 221 CDD RING_CH-C4HC3_MARCH 15 61 - -
Cca07g02470 221 SUPERFAMILY RING/U-box 13 64 - -
Cca07g02470 221 ProSiteProfiles Zinc finger RING-CH-type profile. 7 67 IPR011016 GO:0008270
Cca07g02470 221 SMART ringv_2 14 61 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02470 Cca-Chr7 53453665 53456065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02470 2 61 C3H Transcription Factor Family AT2G37950 41.270 1.74e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02470 - - gmx:100784696 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02470 07 53453665 53456065 Cca07g02470 07 53453665 53456065 ECH