Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02462 ATGGCCAAAGATCATGGATTTGTCATTGGAATCGACCTTGGCACAACTTACTCGTGTGTTGCAGTATGGAAGGAACAGCACTGTCGAGTGGAGATCATCCACAATGATCAAGGCAACAACACCACTCCTTCTTGTGTTGCTTTCACGACTCATGAAAGATTGATTGGTGATTCTGCTAAAAATCAGGCTGCCACCAATCCAGAGAACACCATCTTCGATGCCAAGAGGTTAATTGGTAGGAGATATAGTGATCATGTTGTTCAAAAAGATATATTGTTGTGGTCATTCAAGGTCATTGCTGGTACTAATGACAAACCCATGATCGTCATTAACTACAAGAATCAAGAGAAATACCTTTCGGCTGAGGAAGTATCATCTATGATCCTCACAAAGATGAGGGAGATTGCTGAGAACTATTTGGAGTCACCGGTTAAGAATGCTGTTGTTACTGTGCCTGCATATTTCAATAACTCTCAGCGTAAAGCCACCATAGATGCTGGTGCCATTGCCGGTCTCAATGTTGTCCGAATAATCAATGAACCTACCGCTGCAGCTATTGCATATGGCCTTGACAAGAGAACTAATTGTGTTGGAGAGCGAAACATTTTCATATTTGACTTTGGCGGTGGTACTTTTGACGTGTCTCTACTCACAATTAAGGATAAGGTGTTCCAAGTTAAGGCCACTGCTGGAAACACTCACCTCGGGGGAGAGGACATTGATAACAGAATGGTGAATTACTTTGTAGAAGAGATGAAAAGGAAAAACAAAGTGGACATTAGTGGCAACCCAAGAGCCCTAAGGAGGTTGAGAACTGCATGTGAGAGGGCAAAAAGGACACTCTCGTATGCTGTTACTACCAACATTGAGGTGGATGCTATATTTCAAGGCATTGACTTGTGTTCTTCCATCACTCGTGCAAAGTTTGAGGAAATCAATATGAAGCTGTTTGAAGAGTGTATGAATACTGTAGAAAGGTGTCTTAGTGATGCTAAGATGGACAAAAGCAGTGTGCATGATGTTGTGCTTGTTGGTGGTTCTTCTAGGATTCCCAAAGTGCAACAACTATTGCAAGACTACTTCAAAGGGAAGGATCTTTGCAAGAGTATCAACCCTGACGAGGCTGTTGCTTATGGTGCAGCTGTGCAGGCTGCTTTGTTGAGTGAAGGCATTAAGAATGTTCCAAACTTGGTTCTGTTGGATGTTACACCACTCTCACTCGGTAAGGATATAGTTGGAGATATCATGAGTGTTGTGATTCCTAGGAATACTACTATTCCTGTAAAGAGGACAAAAGAATACATGACAATTGAAGATAACCAACCCTCGACCCGGATTAAAGTTTATGAGGGTGAGAGAACTAGAGCCAGTGATAATAATTTGTTGGGTTCTTTTGTTCTTTCTGGATTTCCTCGGGTTCCTCGTGGCCATGCTTTTTGTGTGACTTTTGCATTAGATGAAAATAGCATCCTTTCTGTTTCTGCTGAGGATAAAACAACTGGTAGCAAGAATGAGATTATCATAACCAATGACAGAGAAAGACTGTCAACGGTAGAAATTAATAGAATGATTCAAGAAGCCGAATATTACAAGGCTGAAGATGAAAAGTTCCTGAGGAAGGCCAAAACAATGAATGattaa 1641 0.4138 MAKDHGFVIGIDLGTTYSCVAVWKEQHCRVEIIHNDQGNNTTPSCVAFTTHERLIGDSAKNQAATNPENTIFDAKRLIGRRYSDHVVQKDILLWSFKVIAGTNDKPMIVINYKNQEKYLSAEEVSSMILTKMREIAENYLESPVKNAVVTVPAYFNNSQRKATIDAGAIAGLNVVRIINEPTAAAIAYGLDKRTNCVGERNIFIFDFGGGTFDVSLLTIKDKVFQVKATAGNTHLGGEDIDNRMVNYFVEEMKRKNKVDISGNPRALRRLRTACERAKRTLSYAVTTNIEVDAIFQGIDLCSSITRAKFEEINMKLFEECMNTVERCLSDAKMDKSSVHDVVLVGGSSRIPKVQQLLQDYFKGKDLCKSINPDEAVAYGAAVQAALLSEGIKNVPNLVLLDVTPLSLGKDIVGDIMSVVIPRNTTIPVKRTKEYMTIEDNQPSTRIKVYEGERTRASDNNLLGSFVLSGFPRVPRGHAFCVTFALDENSILSVSAEDKTTGSKNEIIITNDRERLSTVEINRMIQEAEYYKAEDEKFLRKAKTMND 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02462 546 Gene3D - 193 367 - -
Cca07g02462 546 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 546 IPR029047 -
Cca07g02462 546 SUPERFAMILY Actin-like ATPase domain 199 388 IPR043129 -
Cca07g02462 546 SUPERFAMILY Actin-like ATPase domain 7 192 IPR043129 -
Cca07g02462 546 ProSitePatterns Heat shock hsp70 proteins family signature 2. 204 217 IPR018181 -
Cca07g02462 546 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Cca07g02462 546 Pfam Hsp70 protein 8 544 IPR013126 GO:0005524|GO:0140662
Cca07g02462 546 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 541 IPR029047 -
Cca07g02462 546 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 546 - -
Cca07g02462 546 ProSitePatterns Heat shock hsp70 proteins family signature 3. 341 355 IPR018181 -
Cca07g02462 546 PANTHER HEAT SHOCK PROTEIN 70KDA 4 546 IPR013126 GO:0005524|GO:0140662
Cca07g02462 546 PRINTS 70kDa heat shock protein signature 7 20 - -
Cca07g02462 546 PRINTS 70kDa heat shock protein signature 37 49 - -
Cca07g02462 546 PRINTS 70kDa heat shock protein signature 59 67 - -
Cca07g02462 546 PRINTS 70kDa heat shock protein signature 147 167 - -
Cca07g02462 546 PRINTS 70kDa heat shock protein signature 210 220 - -
Cca07g02462 546 PRINTS 70kDa heat shock protein signature 338 354 - -
Cca07g02462 546 PRINTS 70kDa heat shock protein signature 370 390 - -
Cca07g02462 546 PRINTS 70kDa heat shock protein signature 396 415 - -
Cca07g02462 546 PRINTS 70kDa heat shock protein signature 476 492 - -
Cca07g02462 546 Gene3D - 72 127 - -
Cca07g02462 546 Gene3D - 9 385 - -
Cca07g02462 546 Gene3D Actin; Chain A, domain 4 236 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02462 Cca-Chr7 53362015 53363756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02462 2 545 Calmodulin-binding Proteins AT3G12580 70.330 0.0 790