Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02460 ATGGTGAACTATTTTGTAGAAGAGATCAAAAGGAAAAACAAAGTGGACATTAGTGGCAATCCTAGGGCTCTAAGGAGGTTGAGAACTGCATGTGAGAGGGCAAAAAGGACACTCTCTTGTGTTGTTACCACCAAAGTTGATGTTGATGCTATATTTCAAGGCATAGACTTCAACTCTTCAATCAATCGTGCAAGGTTTGAGGAAATTAATATGGAGCTGTTTGAAGAGTGCATTGAGACAGTAGAGAAGTGTCTTACTGATGCTAAGATGGACAAAAGCAGTGTGCATGATGTTGTCCTTGTTGGTGGCTCTTCTAGAATTCCCAAAGTGCAGCAGTTATTGCAGGCTTTCTTCAATGagaacaccatcttcgATGCCAAGAGGTTGATTGGTAGGAAATATAGCGAGCAAAATGTTCAAAAagataaaatgttgtggccatttaaggtcgttgctggtaccaatgacaaaccaatgatcgtggttaaatacaagggtcaggagaagcaactttgtgctgaggaagtatcatccatggtccttgttaagatgcgggaGATTGCTGAGGCTTTTTTGGAAAAACCTGTGAAGAATGCTGTTGTTACTGTGCCTGCTTATTTCAATGACTCTCAGCGTAAAGCCACCATGGATGCTGGTGCCATTGCTGGCCTCAATGTTATACGGATAATCAGTGAACCCACTGCTGCTGCTATTGCATATGGCCTTGACAAGAGAACTAATTGTGTTGGAGAGCGAAACATTTTCATCTTTGACTTAGGTGGTGGTACTTTTGATGTGTCACTCCTCACAATCAAGGATAAGGTCTTCCAGGTTAAGGCCACTGCTGGAAACACTCATCTTGGAGGAGAGGACATCGACAACAGAATGGTGAACTATTTTGTAGAAGAGATCAAAAGGAAAAACAAAGTGGACATTAGTGGCAATCCTAGGGCTCTAAGGAGGTTGAGAACTGCATGTGAGAGGGCAAAAAGGACACTCTCTTGTGTTGTTACCACCAAAGTTGATGTTGATGCTATATTTCAAGGCATAGACTTCAACTCTTCAATCAATCGTGCAAGGTTTGAGGAAATTAATATGGAGCTGTTTGAAGAGTGCATTGAGACAGTAGAGAAGTGTCTTACTGATGCTAAGATGGACAAAAGCAGTGTGCATGATGTTGTCCTTGTTGGTGGCTCTTCTAGAATTCCCAAAGTGCAGCAGTTATTGCAGGCTTTCTTCAATGGTAAAGATTTGTGCAAGAGTATTAACCCTGATGAGGCTGTTGCTTATGGCGCAGCTGTGCAAGCTGCATTGTTGAGTAAAGAAATGGATGATTGGGTTTTTATTAACTTTTGCAGATGCCAAGAGGTTGATTGGTAG 1380 0.3717 MVNYFVEEIKRKNKVDISGNPRALRRLRTACERAKRTLSCVVTTKVDVDAIFQGIDFNSSINRARFEEINMELFEECIETVEKCLTDAKMDKSSVHDVVLVGGSSRIPKVQQLLQAFFNENTIFDAKRLIGRKYSEQNVQKDKMLWPFKVVAGTNDKPMIVVKYKGQEKQLCAEEVSSMVLVKMREIAEAFLEKPVKNAVVTVPAYFNDSQRKATMDAGAIAGLNVIRIISEPTAAAIAYGLDKRTNCVGERNIFIFDLGGGTFDVSLLTIKDKVFQVKATAGNTHLGGEDIDNRMVNYFVEEIKRKNKVDISGNPRALRRLRTACERAKRTLSCVVTTKVDVDAIFQGIDFNSSINRARFEEINMELFEECIETVEKCLTDAKMDKSSVHDVVLVGGSSRIPKVQQLLQAFFNGKDLCKSINPDEAVAYGAAVQAALLSKEMDDWVFINFCRCQEVDW 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02460 459 PANTHER HEAT SHOCK PROTEIN 70KDA 120 447 IPR013126 GO:0005524|GO:0140662
Cca07g02460 459 SUPERFAMILY Actin-like ATPase domain 115 244 IPR043129 -
Cca07g02460 459 Gene3D - 245 419 - -
Cca07g02460 459 Gene3D - 77 120 - -
Cca07g02460 459 Gene3D Actin; Chain A, domain 4 1 76 - -
Cca07g02460 459 PANTHER HEAT SHOCK PROTEIN 70KDA 1 119 IPR013126 GO:0005524|GO:0140662
Cca07g02460 459 ProSitePatterns Heat shock hsp70 proteins family signature 3. 393 407 IPR018181 -
Cca07g02460 459 ProSitePatterns Heat shock hsp70 proteins family signature 2. 256 269 IPR018181 -
Cca07g02460 459 PRINTS 70kDa heat shock protein signature 422 442 - -
Cca07g02460 459 PRINTS 70kDa heat shock protein signature 199 219 - -
Cca07g02460 459 PRINTS 70kDa heat shock protein signature 390 406 - -
Cca07g02460 459 PRINTS 70kDa heat shock protein signature 262 272 - -
Cca07g02460 459 ProSitePatterns Heat shock hsp70 proteins family signature 3. 98 112 IPR018181 -
Cca07g02460 459 SUPERFAMILY Actin-like ATPase domain 1 122 IPR043129 -
Cca07g02460 459 Pfam Hsp70 protein 120 445 IPR013126 GO:0005524|GO:0140662
Cca07g02460 459 Pfam Hsp70 protein 1 119 IPR013126 GO:0005524|GO:0140662
Cca07g02460 459 Gene3D - 121 437 - -
Cca07g02460 459 Gene3D - 124 179 - -
Cca07g02460 459 Gene3D Actin; Chain A, domain 4 288 371 - -
Cca07g02460 459 SUPERFAMILY Actin-like ATPase domain 251 440 IPR043129 -
Cca07g02460 459 PANTHER HEAT SHOCK 70 KDA PROTEIN 1 119 - -
Cca07g02460 459 PANTHER HEAT SHOCK 70 KDA PROTEIN 120 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02460 Cca-Chr7 53307061 53309685 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02460 121 447 Calmodulin-binding Proteins AT3G12580 76.453 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02460 K03283 - gmx:102667578 548.895