Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02448 ATGGCAAAAGAAGAGGGTCTTGCGATAGGAATCGACCTTGGAACAACTTACTCTTGTGTTGCGGTATGGCAGGAGCAGCACTGTCGAGTGGAGATCATTCACAATGACCAAGGCAACAACACTACTCCTTCTTCTGTTGCTTTCACTGACCATGAAAGGTTGATCGGTGATGCTGCTAAAAATCAAGCTGCCACCGATCCAGAGAACACCATCTTCGATGCCAAGAGGTTGATTGGTAGGAAATATAGCGAGCACAATGTTCAAAAAGATAAAATGTTGTGGCCATTTAAAGTCGTTGCTGGTGCCAATGACAAACCGATGATCGTGGTTAAATACAAGGGTCAGGAGAAGCAACTTTGTGCTGAGGAAGTATCATCCATGATCCTTGTAAAGTTGCGGGATATTGCTGAGGCTTTTTTGGAAAAACCTGTGAAGAATGCTGTTGTTACTGTGCCAGCTTATTTCAATGACTCTCAGCGTAAGCCCACCATGGATGCTGGTGCCATTGCTGGCCTCAATGTTATACGGATAATCAATGAACCCGCTGCTGCAGCTATTGCATATGGCCTTGACAAGAGAAGTAATTGGTCGACTCGAGACCGCGAGATAAAAAGGAAAAACAAAGTGGACATTAGTGGCAATCCTAGGGCTCTAAGGAGGTTAAGAACTGCATGTGAGAGGGCAAAAAGGACACTCTCTTCTGCTGTTACCACCAAAGTTGATGTTGATGCTATATTTCAAGGCATAGACTTCAACTCTTCAATCAGTCGTGTTAGGTTTGAGGAAATTAACATGGAGCTGTTTGAAGAGTGCATTGAGACAGTAGAGAAGTGTCTTACTGATGCTAAGATGGACAAAAGCAGTGTGCATGATGTTGTCCTTGTTGGTGGCTCTTCTAGAATTCCCAAAGTGCAGCAGTTATTGCAGGCTTTCTTCAATGGTAAAGATTTGTGCAAGAGTATTAACCCTGATGAGGCTGTTGCTTATGGCGCAGCTGTGAAAGCTGCATTGTTGAGTAAATGCTTTAAGAATGTTCCTGATTTGGTATTATTAGATGTCACACCGCTGTCTCTCGGTGTATCGGTCAAAGGAGATCTTATGAGTGTTGTGGTTCCTAGGAATACTTCCATTCCTCGAAAGATGAAACAAGAATTTAGAACATCCGTTGATAACCAATCTTTGGCCAGGATTATGGTTTACGAGGGTGAGAGAACAAGAGCAAGTGATAACAATTTGCTGGGGTCTTTTGTTCTTTCTGGTTTTCCTCCTGCTCCTCGTGGGCATCCTTTATATGTGAGCTTTTCCATCGATGAAAATGGTATATTATCTGTTTCTGCTGAGGAAAAGACCACTGTCAATAAGAACGAAATTACTATCATCAATGATAATAAAGACAGGTTGTCGGCCAAAGAAATTGAAAGAATGATACAAGAAGCAAAGTTTTATGAGGCCGAAGATAGAGAGTTCCTTAAGAAAGCCAATACTAAGAATGTCTTGAAGAAGGTTTGTATCAGGTCAATTGTTCGCCCTAAAGAAAAGGAGGACTTACGTTCTGCAATAAATAGGGCTACTGATTTGCTTGATGAGGAGAATGAACAGTATGACATTGCTGTGTTTGAGGCTTGTCTGAAAGAGCTTGAGAGCTCCCTCGAAAGATTCGAGTCCTGGTGA 1671 0.4237 MAKEEGLAIGIDLGTTYSCVAVWQEQHCRVEIIHNDQGNNTTPSSVAFTDHERLIGDAAKNQAATDPENTIFDAKRLIGRKYSEHNVQKDKMLWPFKVVAGANDKPMIVVKYKGQEKQLCAEEVSSMILVKLRDIAEAFLEKPVKNAVVTVPAYFNDSQRKPTMDAGAIAGLNVIRIINEPAAAAIAYGLDKRSNWSTRDREIKRKNKVDISGNPRALRRLRTACERAKRTLSSAVTTKVDVDAIFQGIDFNSSISRVRFEEINMELFEECIETVEKCLTDAKMDKSSVHDVVLVGGSSRIPKVQQLLQAFFNGKDLCKSINPDEAVAYGAAVKAALLSKCFKNVPDLVLLDVTPLSLGVSVKGDLMSVVVPRNTSIPRKMKQEFRTSVDNQSLARIMVYEGERTRASDNNLLGSFVLSGFPPAPRGHPLYVSFSIDENGILSVSAEEKTTVNKNEITIINDNKDRLSAKEIERMIQEAKFYEAEDREFLKKANTKNVLKKVCIRSIVRPKEKEDLRSAINRATDLLDEENEQYDIAVFEACLKELESSLERFESW 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02448 556 Gene3D - 72 123 - -
Cca07g02448 556 SUPERFAMILY Actin-like ATPase domain 201 339 IPR043129 -
Cca07g02448 556 SUPERFAMILY Actin-like ATPase domain 8 192 IPR043129 -
Cca07g02448 556 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 344 498 IPR029047 -
Cca07g02448 556 Gene3D - 271 318 - -
Cca07g02448 556 PANTHER HEAT SHOCK PROTEIN 70KDA 201 552 IPR013126 GO:0005524|GO:0140662
Cca07g02448 556 PANTHER HEAT SHOCK 70 KDA PROTEIN 201 552 - -
Cca07g02448 556 Gene3D Actin; Chain A, domain 4 204 270 - -
Cca07g02448 556 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 339 536 IPR029047 -
Cca07g02448 556 Coils Coil 513 533 - -
Cca07g02448 556 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Cca07g02448 556 ProSitePatterns Heat shock hsp70 proteins family signature 3. 292 306 IPR018181 -
Cca07g02448 556 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 198 - -
Cca07g02448 556 PRINTS 70kDa heat shock protein signature 59 67 - -
Cca07g02448 556 PRINTS 70kDa heat shock protein signature 427 443 - -
Cca07g02448 556 PRINTS 70kDa heat shock protein signature 7 20 - -
Cca07g02448 556 PRINTS 70kDa heat shock protein signature 289 305 - -
Cca07g02448 556 PRINTS 70kDa heat shock protein signature 347 366 - -
Cca07g02448 556 PRINTS 70kDa heat shock protein signature 37 49 - -
Cca07g02448 556 PRINTS 70kDa heat shock protein signature 321 341 - -
Cca07g02448 556 Gene3D - 319 336 - -
Cca07g02448 556 Pfam Hsp70 protein 8 194 IPR013126 GO:0005524|GO:0140662
Cca07g02448 556 Pfam Hsp70 protein 201 552 IPR013126 GO:0005524|GO:0140662
Cca07g02448 556 Gene3D - 4 203 - -
Cca07g02448 556 PANTHER HEAT SHOCK PROTEIN 70KDA 4 198 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02448 Cca-Chr7 53179231 53187860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02448 2 548 Calmodulin-binding Proteins AT3G12580 60.427 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02448 K03283 - gmx:102667578 779.63