Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02446 ATGGCCaaagaagatcaatttgccgtaggaatcgaccttggcacaacgtactcttgtgttgcagtgtggcaggagcaacataatagagtagaaataatccataatgaccaaggcaacagaacaacaccttcttgcatcgctttcacagacaagcagagattgattggtgatgccgctaagaatcaggctgctgccaacccagaaaacactgtctttgATGCTAAGAGGTTAATTGGTAGGAAATATAGTGATCCCATTATTCAAAAAGACAAAATgttgtggccattcaaggttgttgctggtgttaatgatcaacccatgatcatagttaagtacaagggtcaagagaagcgtctttgcgctgaggaagtatcagccatggtcctgacaaacatgCGGCAGATTGCAGAGGCGTATTTGGAATCACCTGTAAAGAAAGCTGTTGTTACCGTGCCTGCTTATTTCAATGACTCTCAGCGAAAAGCCACCATTGATGCTGCTGCAATTGCTGGCCTCACTGTTATGCGAATAATCAATGAACCTACCGCTGCAGCTATTGCATATGGCCTTGACAAGAGAACTAATTGTGTTGGAGACCGAAACATTTTCATCTTTGACCTAGGTGGTGGGACTTTTGATGTGTCTTTGTTCACATTTAAGGACAAAGTTATCCAAGTTAAGGCCACTGAAGGAAATACTCACCTTGGAGGAGAGGACTTTGACAACAGAATGGTAAACTACTTTGTAGAGGAGTTCAAGAGGAAGAAGAAAGTGGACATTAGTGGGAACCCAAGGGCCTTGAGGAGGTTAAGAACTGCTTGTGAAAGGGCAAAAAGGACACTTTCATACGCTGTTGATACCACCATTGAGGTAGATGCTTTATTTCAGGGCATTGACTTCTCTTCTCTAGTCACTCGAGCAAGGTTTGAGGAAATCAATATGGATCTCTTTGAAGAGTGTATGAAGACAGTAGATGCGTGTCTTACTTATGCTAATATGGATAAGAGCAGTGTAGATGATGTTGTTCTTGTTGGTGGCTCTTCTAGGATTCCCAAAGTGCAGAAACTATTGCAGGAATTCTTCGAGGGGAAGGATCTGTGCAAGAACATTAACCCTGACGAAGCTGTTGCTCACGGTGCAGCTGTGCAGGCTGCTTTGTTGAGTGAAGACATTAAAAATGTTCCAGACTTGGAGCTGTTGGATGTTACACCACTCTCACTTGGTACATCAGTCAAGGGAGATATCATGAGTGTCATGATTCCTAGGAATACTACTATTCCTGTAAAGAGGACACAAGAATTCTGTACAGCTGAAGATAACCAATCCTCTGTCCTGGTTGACGTTTATGAGGGTGAGAGATCAAGAATAGATGATAACAATTTGTTGGGTTATTTTTATCTTTCTGGCTTTCCTCAAGTTCCTCTGGGCCATCCTCTTTATGTGTGTTTTGCCATTGATGAAAATGGTATCCTAACTGTTTCTGCCGAGGAAAAAACCACAGGCAATAGGAACCAAGTTACCATAACCAATAACATAGAAAGACTGTCACCAATAGAAATTAAAAGAATCATTCAAGAAGCTGAAAGATACCAGGTTGAAGATAGGAAGTTCCGTAGGAAGGCCAATGCACTGAATGCTTTGGATGATTATGTTTACAAGATGGAGAAAGTTTTAAAGAAGGATGATATCAGTTCACAACAAAGGAAGAAGATCAGTTCTGCAGTTATTAAGGCCACAAATTTGCTTAAGGTTAATGACTCCGAGGATGAAACAGAGATGTATGAGGATTATTTGATCGAACTTGGGAGCCTCTTCGACGGTGTCATTGGCAACTTTGAATAG 1842 0.3371 MAKEDQFAVGIDLGTTYSCVAVWQEQHNRVEIIHNDQGNRTTPSCIAFTDKQRLIGDAAKNQAAANPENTVFDAKRLIGRKYSDPIIQKDKMLWPFKVVAGVNDQPMIIVKYKGQEKRLCAEEVSAMVLTNMRQIAEAYLESPVKKAVVTVPAYFNDSQRKATIDAAAIAGLTVMRIINEPTAAAIAYGLDKRTNCVGDRNIFIFDLGGGTFDVSLFTFKDKVIQVKATEGNTHLGGEDFDNRMVNYFVEEFKRKKKVDISGNPRALRRLRTACERAKRTLSYAVDTTIEVDALFQGIDFSSLVTRARFEEINMDLFEECMKTVDACLTYANMDKSSVDDVVLVGGSSRIPKVQKLLQEFFEGKDLCKNINPDEAVAHGAAVQAALLSEDIKNVPDLELLDVTPLSLGTSVKGDIMSVMIPRNTTIPVKRTQEFCTAEDNQSSVLVDVYEGERSRIDDNNLLGYFYLSGFPQVPLGHPLYVCFAIDENGILTVSAEEKTTGNRNQVTITNNIERLSPIEIKRIIQEAERYQVEDRKFRRKANALNALDDYVYKMEKVLKKDDISSQQRKKISSAVIKATNLLKVNDSEDETEMYEDYLIELGSLFDGVIGNFE 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02446 613 Gene3D - 72 127 - -
Cca07g02446 613 SUPERFAMILY Actin-like ATPase domain 8 192 IPR043129 -
Cca07g02446 613 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 383 512 IPR029047 -
Cca07g02446 613 PANTHER HEAT SHOCK PROTEIN 70KDA 5 611 IPR013126 GO:0005524|GO:0140662
Cca07g02446 613 Gene3D - 193 367 - -
Cca07g02446 613 PRINTS 70kDa heat shock protein signature 7 20 - -
Cca07g02446 613 PRINTS 70kDa heat shock protein signature 37 49 - -
Cca07g02446 613 PRINTS 70kDa heat shock protein signature 59 67 - -
Cca07g02446 613 PRINTS 70kDa heat shock protein signature 147 167 - -
Cca07g02446 613 PRINTS 70kDa heat shock protein signature 210 220 - -
Cca07g02446 613 PRINTS 70kDa heat shock protein signature 338 354 - -
Cca07g02446 613 PRINTS 70kDa heat shock protein signature 370 390 - -
Cca07g02446 613 PRINTS 70kDa heat shock protein signature 396 415 - -
Cca07g02446 613 PRINTS 70kDa heat shock protein signature 476 492 - -
Cca07g02446 613 ProSitePatterns Heat shock hsp70 proteins family signature 2. 204 217 IPR018181 -
Cca07g02446 613 PANTHER HEAT SHOCK 70 KDA PROTEIN 5 611 - -
Cca07g02446 613 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 548 IPR029047 -
Cca07g02446 613 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Cca07g02446 613 Gene3D - 515 612 IPR029048 -
Cca07g02446 613 Pfam Hsp70 protein 8 601 IPR013126 GO:0005524|GO:0140662
Cca07g02446 613 ProSitePatterns Heat shock hsp70 proteins family signature 3. 341 355 IPR018181 -
Cca07g02446 613 Gene3D - 9 382 - -
Cca07g02446 613 Gene3D Actin; Chain A, domain 4 236 319 - -
Cca07g02446 613 SUPERFAMILY Actin-like ATPase domain 199 388 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02446 Cca-Chr7 53157133 53163002 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02446 8 609 Calmodulin-binding Proteins AT3G12580 65.461 0.0 811