Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02442 atgggcagtaaatacgagggacttgcagtgggaatcgaccttggcacaacttactcgtgtgttgcagtatggcaggagcagcattgtcgggtggagatcatccacaacgatcaaggcaacaacaccactccttctgttgttgctttcacagacaatcaaaggttgattggtgatgcagctaaaaatcaggctgctgcaaacGCAGAGAACACTGTGTTTGATGCTAAGAGATTGATTGGTAGGAAATATAGTGACCCAATTATTCAAAAGGATAAAATGAtgtggccattcaaggtcgtttctggtgttaatgacaaacctatgattgttgttaactataagggtcaggagaagcatctttcagctgaggaagtatcatctatggtcctcacaaagatgcgggacaTTGCAGAGGCGTATTTGGAAACATCTGTAAAGAATGCAGTGGTTACTGTGCCTGCTTATTTCAATGACTCTCAGCGTAAAGCCACCATTGATGCTGGAACCATTGCTGGCCTCAATGTCTTGCGGATAATCAACGAACCTACTGCAGCAGCTATTGCATATGGCCTTGATAGGAGAATTAATTGTGTTGGTGAGCGAAATATTTTCGTATTTGACCTTGGTGGTGGTACCTTTGATGTGTCTCTCCTCACAATTAAGGATAAGGTCTTCCAAGTGAAGGCTACTGCAGGAAACACTCACCTTGGAGGAGAGGACATTGATAACAGAATGGTAAACTACTTCGTAGAGGAGATCAAAAGGAAAAACAAAGTGGACATTAGTGGGAACCCAAGAGCCCTTAGGAGATTGAGAAGTGCATGCGAGAGGGCAAAAAGGACACTCTCGTGTGCACTGACTGCCAACATTGAGATAGATGCTTTATTTCAGGGCATTGACTTCTGTTCTTCAATCACTCGTGCAAGGTTTGACGAAATGAATATGGAGCTGTTTGAAGAGTGTATGGAGACAGTAAAGAGGTGTCTTACTGATGCTAAGATGGACAAGAGCAGTGTACATGATATTGTTCTTGTGGGTGGATCTTCTAGGATTCCCAAAGTCCAGCAGTTATTGCAGGACTTCTTCAACAGGAAGGATCTGTGCAAGAGCATCAACCCTGACGAGGCTGTTGCTTATGGTGCAGCTGTGCAGGCTGCTTTGTTGAGTGAAGGCGTTAAGAATGTTCCAAATTTGGTGCTGCTGGATGTGACACCACTGTCTCTTGGTGTATCGACATTTGGAGATATCATGAGTGTGGTGATTCCTAGAAATACTACTATTCCTGTAAAGAGGACACAAAAATTCGTTACGGTTTATGATAACCAATCCTCTATCATGACTGAGGTTTATGAGGGCGAGCGACCAAGAGCCAGTGATAACAATTTGTTGGGTTTTTACCAGCTTTCTGGTCTTCCTCTTGCTCCTCGTGGCCATCCTACGTATGATTGCTTTGCCATAGATGAAAACGGTATCCTATCTGTTTCTACCGAAGAGAAAATCACCGGCAAGAAGAATCAGATTACGATAACCAATAACAAAGAGAGACTGTCAGCCGGAGAAATTAATAGAATGATTCTAGAAGCTGAAATTTACCAGGCTGAAGATAGGAAGTTCCTTAGGAAGGCTAAGGCCAGGAATTCTTTGGATGATTACATTTACAAGATGAGGAATGTTTTGAAGAACAAGTATACTAGTTCAAAGCTTTGCTCACAAGAAAGGGACAAACTTAGTTCTGCAATTACTAAGGCCTCAAATTTGCTTGATGGTGACAACAAACAGGATGAAATAGAGGTGTTTGAGGATTATCTAAAGGAGTTTGTGAGCCTCTATGATCGCATCATGGGCAAGATTGGTTAA 1857 0.3463 MGSKYEGLAVGIDLGTTYSCVAVWQEQHCRVEIIHNDQGNNTTPSVVAFTDNQRLIGDAAKNQAAANAENTVFDAKRLIGRKYSDPIIQKDKMMWPFKVVSGVNDKPMIVVNYKGQEKHLSAEEVSSMVLTKMRDIAEAYLETSVKNAVVTVPAYFNDSQRKATIDAGTIAGLNVLRIINEPTAAAIAYGLDRRINCVGERNIFVFDLGGGTFDVSLLTIKDKVFQVKATAGNTHLGGEDIDNRMVNYFVEEIKRKNKVDISGNPRALRRLRSACERAKRTLSCALTANIEIDALFQGIDFCSSITRARFDEMNMELFEECMETVKRCLTDAKMDKSSVHDIVLVGGSSRIPKVQQLLQDFFNRKDLCKSINPDEAVAYGAAVQAALLSEGVKNVPNLVLLDVTPLSLGVSTFGDIMSVVIPRNTTIPVKRTQKFVTVYDNQSSIMTEVYEGERPRASDNNLLGFYQLSGLPLAPRGHPTYDCFAIDENGILSVSTEEKITGKKNQITITNNKERLSAGEINRMILEAEIYQAEDRKFLRKAKARNSLDDYIYKMRNVLKNKYTSSKLCSQERDKLSSAITKASNLLDGDNKQDEIEVFEDYLKEFVSLYDRIMGKIG 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02442 618 Gene3D - 10 386 - -
Cca07g02442 618 SUPERFAMILY Actin-like ATPase domain 200 389 IPR043129 -
Cca07g02442 618 Pfam Hsp70 protein 9 604 IPR013126 GO:0005524|GO:0140662
Cca07g02442 618 Gene3D Actin; Chain A, domain 4 237 320 - -
Cca07g02442 618 Gene3D - 546 618 IPR029048 -
Cca07g02442 618 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Cca07g02442 618 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 617 IPR029048 -
Cca07g02442 618 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cca07g02442 618 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Cca07g02442 618 PANTHER HEAT SHOCK PROTEIN 70KDA 4 616 IPR013126 GO:0005524|GO:0140662
Cca07g02442 618 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Cca07g02442 618 Gene3D - 73 128 - -
Cca07g02442 618 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 616 - -
Cca07g02442 618 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 394 549 IPR029047 -
Cca07g02442 618 Gene3D - 194 368 - -
Cca07g02442 618 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Cca07g02442 618 PRINTS 70kDa heat shock protein signature 8 21 - -
Cca07g02442 618 PRINTS 70kDa heat shock protein signature 38 50 - -
Cca07g02442 618 PRINTS 70kDa heat shock protein signature 60 68 - -
Cca07g02442 618 PRINTS 70kDa heat shock protein signature 148 168 - -
Cca07g02442 618 PRINTS 70kDa heat shock protein signature 211 221 - -
Cca07g02442 618 PRINTS 70kDa heat shock protein signature 339 355 - -
Cca07g02442 618 PRINTS 70kDa heat shock protein signature 371 391 - -
Cca07g02442 618 PRINTS 70kDa heat shock protein signature 397 416 - -
Cca07g02442 618 PRINTS 70kDa heat shock protein signature 477 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02442 Cca-Chr7 53111116 53114142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02442 1 617 Calmodulin-binding Proteins AT3G12580 67.690 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02442 K03283 - gmx:102667572 989.178