Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02437 ATGGTCTTCCCGTCCCTTCCAATCTATCTAGATCCACCCAACTGGTCACAACAGCAACCTAATCATCCAGAAGGAATTGGCAACCAGGATCCTCGGATTCCACCACCTCTATCACCGCTGCCACCCTCAACAGTGGCAGCGGAGGTTGGAGGTGGTGGCTATCAGGGCTCTATCAGACCAGGATCGATGGCCGATAGAGCCAGGATGGCCAAGCTGCACCAACCTGATGCAGCTCTCAAATGTCCACGGTGTGAATCTACAAACACCAAGTTTTGCTACTACAACAACTACAGTCTTTCACAGCCTCGCCACTTCTGCAAGACTTGCCGTCGTTACTGGACCAGAGGAGGTGCACTCAGAAACGTGCCAGTTGGAGGTGGCTGTAGAAGGAACAAAAGAAGCAAAGGAAGAAGTGGTAGATCAAAGTCTCCTATGAAACCTGCAACAGGTTCCAACTCTGCAAGTGCTAATTCTTCTTCTAGTGGCTGCACCAATGATCATCATAATGTGATGATGGCTCATATGCCAACTCCAACACCAACTCAATTTCCATTCTTGACCTCTTTACATCATTATAATAGTGACTACGTTTCTGGGGGCATTGGATCTCATTTTGGGGTGACTCCAACAACACCTTTGGTGGCTAGAAATGGCAACACTAGTAACAACAATGTTGAGTTTCAAATTGGAACTAGTTCAGCACTTGGTAATAGTGGTGGTGGGGCTATGTTGTTGTCATCAAATGGCCTTGGTGAGCAATGGAGGTTGAACAACCTGCAACAAGTTCAACATCAACAGTTCCCTTTCTTGAGTAGTACTAATTTGGAGCCACAAATTGGGGTGTTTCAGTTTGGTGGAGAAAACAATAATGGTGAACCGCCAAGTTATGCAAAGGATGGAGGCCGGTTTAATATTCGTTCTAAGATGGATTCTATTTCTAGTGTAAGTGGAATAATGCCTCAACAGATTAACACAATAAAACTGGAAGAAAGTCAAGGTTTGAGTTTGCCAAAAACTCTCTTGATGATGAGTAGTTCGGGAAATGATGCACTTTGGAACGGAAGTGGCAATGCATGGAGTGAAGTTCCTAGTTTCACTCCCTCACCAAACCACTTGTTGTGA 1122 0.4537 MVFPSLPIYLDPPNWSQQQPNHPEGIGNQDPRIPPPLSPLPPSTVAAEVGGGGYQGSIRPGSMADRARMAKLHQPDAALKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGRSGRSKSPMKPATGSNSASANSSSSGCTNDHHNVMMAHMPTPTPTQFPFLTSLHHYNSDYVSGGIGSHFGVTPTTPLVARNGNTSNNNVEFQIGTSSALGNSGGGAMLLSSNGLGEQWRLNNLQQVQHQQFPFLSSTNLEPQIGVFQFGGENNNGEPPSYAKDGGRFNIRSKMDSISSVSGIMPQQINTIKLEESQGLSLPKTLLMMSSSGNDALWNGSGNAWSEVPSFTPSPNHLL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02437 373 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677|GO:0006355
Cca07g02437 373 MobiDBLite consensus disorder prediction 123 173 - -
Cca07g02437 373 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677|GO:0006355
Cca07g02437 373 MobiDBLite consensus disorder prediction 11 25 - -
Cca07g02437 373 MobiDBLite consensus disorder prediction 11 42 - -
Cca07g02437 373 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 368 IPR045174 GO:0003700|GO:0006355
Cca07g02437 373 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 14 368 - -
Cca07g02437 373 Pfam Dof domain, zinc finger 77 133 IPR003851 GO:0003677|GO:0006355
Cca07g02437 373 MobiDBLite consensus disorder prediction 144 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02437 Cca-Chr7 53076230 53078207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02437 1 135 C2C2-Dof Transcription Factor Family AT2G37590 60.959 2.00e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca07g02437 zf-Dof 7.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02437 - - gmx:102662809 551.977