Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02427 ATGGATAATTACGGGTCATCTTCTCCATACCGGTATCCAAACCCTTATATGTACCCTCCCAGTCCCAACCCTCATCAACCGTACCCTCCTCCACCAGGTTCATCTCCTGATCCATATGCACATGCTCCTCCTTATCATCCACATCCTTACCATTCTTCACATTCCTTCAACTATTCATACCATGCACCTCCTAGATCTTCCTCACATTCTGGCAAATTTGAGTATTCCTACCCCCCTCCTGCTGCCCCTTTGAACTTTCCCCACCCTCCACCATcttatgctcaacctccctcttatccttatccttaCCATGTTCCTCCACCAAATCATGGTCCTCCCAGGCCTTCCCTTTCACACCATGCTAGCTTCCAACATGGATCACCTCATTACTATTATCCTCCAAACGATGCCTTTTCGGCTCCCGAAGACCGTCCTGACCTCCATTTACGCAACAATAGCTTCTCCGGTCCCTACCGGCAGGAGAGCACAATCTCTACGGGAGGTGGAGTGCCACAAGCTAGTGACAATTCCAAGCCTCCTCAGGGCTCGGCTTACCCGCCGTTGGATGATCTTATGAGCAATGTTCGGTTGTCTGATGCCCAGGCAAGCCAGCAAACTGCTCCTGCATCGCCGCCTGCACCTGCCGGGCAGCCGATGATGATACATTCCATGTCAGTTTCAAAGATACAACAGAAGAAAGAGGAGTTTTATGGACATGCAAATAACTCCTTCTCGGGGTGGGGATCTTCCTACCACAGTCGGATGGATTCGGGCAGACTCTCGGATTTTTCAGGATCATTTAATGATTCAATGCTTAGTCAGAGCTTGCAGATTGTTCCAGTGCAGAGTAAGGGATCCTTGAGAGTTTTGCTCCTACATGGAAATTTAGATATTTGGGTCCATGAAGCCAAAAATCTTCCAAATATGGACATGTTTCACAAAACATTAGGGGATATGTTTGGTAAATTACCTGGTAGTGTGAGCAATAAAATTGAAGGAACTATGCATAAGAAGATTACTAGTGATCCTTATGTGTCAATTTCAGTATGCAATTCTGTACTTGGGAGGACTTATGTAATTAGCAACTCTGAAAACCCTGTTTGGTTGCAACATTTCTATGTTCCTGTTGCACATCATGCTGCTGAAGTGCACTTTGTTGTTAAAGACAATGATGTTGTGGGTTCACAGCTCATTGGCATTGTGGCAATTCCAGTGGAACAAATATACTCAGGAGAAGTAGTTGAAGGAACCTACCCTGTCCTCAATAATAATGGGAAGCCTTGTAAGCAAGGTGCTGTCTTGAGCCTATCCATTCAGTACATCCCTATGGAGAAACTGAGCATTTATCACCAAGGAGTTGGAGCAGGGCCTGAATACATTGGGGTTCCTGGCACGTATTTTCCTTTGAGAAAAGGTGGTACTGTTACTCTGTATCAAGACGCTCATGTTCCAGATGGCACCCTCCCTAACATGTTGCTTGACAATGGCATGTATTATGTGAATGGAAAGTGTTGGCTTGATATCTTTGAAGCCATAAGTCAAGCTCGGCGTTTGATTTATATTACAGGGTGGTCAGTGTGGCACAAAGTAAGGTTGATTAGGGATGATGCTGGTTGTGCTTCAGACTATACCTTGGGTGATGTTCTAAGGACAAAGTCACAGGAAGGAGTAAGAGTGCTTCTCCTTATCTGGGATGATCCTACGTCAAGAAGCATTTTAGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGACGTTTTTTCAAGCACTCTTCAGTGCAAGTGCTTCTTTGTCCTCGCAGTGGCAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGAACAATATATACACATCATCAGAAAACTGTGATTGTGGATGCTGATGCTGGAAATCATAAAAGAAAAATCATAGCATTTGTTGGTGGACTTGATTTGTGTGATGGGCGATATGATACTCCCCACCATCCTCTTTTTAGAACATTGAATACAATACATAAGGATGACTACCACAACCCTACTTTCACGGGTAATGTTGGTGGTTGTCCGCGGGAACCATGGCATGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTAACTAACTTTGAGGAGCGCTGGTTAAAAGCATCGAAACCTCATGGGATTAAAAAGTTGAAAATTTCATACGATGATGCTTTGCTAAGGCTGGAAAGAATTCCAGATGTTATTGGCATCAATGATGCTCCAAGTATAGGGGAAGATCATCCTGAAGTTTGGCATGTTCAGATATTTCGATCAATTGATTCAAATTCTGTTAGAGCATTTCCAAAGGATCCAAAAGATGCAACGAGCAAGAACCTAGTATGTGGAAAGAATGTGCTGATTGACATGAGCATACATACAGCGTACATTAAGGCCATTCGTGCTGCACAGCATTACATTTATATAGAGAATCAATATTTCATCGGCTCTTCATACAATTGGAGTCAACATAAAGACCTCGGTGCCAATAACTTGATCCCAATGGAAATTGCTCTAAAGATTGCGGAAAAGATAAAAGCAAATGAGAGATTCGCAGTGTATGTTGTTATTCCGATGTGGCCAGAAGGAGTTCCAACAGGGGCTGCCACACAAAGGATTCTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACAATTTACAAGGCTTTGGTTGAGGCAGGACTTGAAGCAGCATTTTCTCCGCAAGATTATTTGAACTTTTTCTGTCTTGGTAATCGAGAGGCCCTGAATTTGTATGATAATGTCAGTGCAACTGGAGCTCCTCCACCAGCAAATAGTCCACAAGCAGCCAGCCGAAGTAGCCAACGATTCATGATTTATGTTCATTCAAAAGGCATGATAGTTGATGATGAATATGTGATTATTGGGTCTGCAAACATCAACCAGCGCTCCATGGAAGGAACAAGGGACAGTGAGATTGCAATGGGAGCCTATCAACCTCATCATACGTGGGCAAGAAAACAATCTTATCCACATGGACAAATCCATGGATATAGGATGTCACTTTGGGCAGAACATACAGGAACTTATGAAGAGTGCTTCTTGCAACCTGAGAGCCTTGAATGTGTAAGAAGGGTTAGAACAATGGGTGAAATAAACTGGAAACAATTTTCAGCAAATGAAGTATCAGAGATGCAAGGGCATCTGCTGAAATACCCTGTAGAAGTTGATAGAAAGGGAAAGGTTAGACCCCTTCCTGGCTATGAAGAGTTCCCAGATGTGGGAGGAAAAATAGTTGGATCTTTTCTGGCCATGAAGGAGAATCTAACCATTTGA 3327 0.4277 MDNYGSSSPYRYPNPYMYPPSPNPHQPYPPPPGSSPDPYAHAPPYHPHPYHSSHSFNYSYHAPPRSSSHSGKFEYSYPPPAAPLNFPHPPPSYAQPPSYPYPYHVPPPNHGPPRPSLSHHASFQHGSPHYYYPPNDAFSAPEDRPDLHLRNNSFSGPYRQESTISTGGGVPQASDNSKPPQGSAYPPLDDLMSNVRLSDAQASQQTAPASPPAPAGQPMMIHSMSVSKIQQKKEEFYGHANNSFSGWGSSYHSRMDSGRLSDFSGSFNDSMLSQSLQIVPVQSKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDMFGKLPGSVSNKIEGTMHKKITSDPYVSISVCNSVLGRTYVISNSENPVWLQHFYVPVAHHAAEVHFVVKDNDVVGSQLIGIVAIPVEQIYSGEVVEGTYPVLNNNGKPCKQGAVLSLSIQYIPMEKLSIYHQGVGAGPEYIGVPGTYFPLRKGGTVTLYQDAHVPDGTLPNMLLDNGMYYVNGKCWLDIFEAISQARRLIYITGWSVWHKVRLIRDDAGCASDYTLGDVLRTKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVQVLLCPRSGKRHSWIKQKEVGTIYTHHQKTVIVDADAGNHKRKIIAFVGGLDLCDGRYDTPHHPLFRTLNTIHKDDYHNPTFTGNVGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPHGIKKLKISYDDALLRLERIPDVIGINDAPSIGEDHPEVWHVQIFRSIDSNSVRAFPKDPKDATSKNLVCGKNVLIDMSIHTAYIKAIRAAQHYIYIENQYFIGSSYNWSQHKDLGANNLIPMEIALKIAEKIKANERFAVYVVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEAGLEAAFSPQDYLNFFCLGNREALNLYDNVSATGAPPPANSPQAASRSSQRFMIYVHSKGMIVDDEYVIIGSANINQRSMEGTRDSEIAMGAYQPHHTWARKQSYPHGQIHGYRMSLWAEHTGTYEECFLQPESLECVRRVRTMGEINWKQFSANEVSEMQGHLLKYPVEVDRKGKVRPLPGYEEFPDVGGKIVGSFLAMKENLTI 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02427 1108 MobiDBLite consensus disorder prediction 52 73 - -
Cca07g02427 1108 SUPERFAMILY Phospholipase D/nuclease 498 718 - -
Cca07g02427 1108 SMART C2_3c 295 417 IPR000008 -
Cca07g02427 1108 Pfam Phospholipase D C terminal 1028 1098 IPR024632 -
Cca07g02427 1108 MobiDBLite consensus disorder prediction 1 190 - -
Cca07g02427 1108 Pfam Phospholipase D Active site motif 955 981 IPR001736 GO:0003824
Cca07g02427 1108 Pfam Phospholipase D Active site motif 620 654 IPR001736 GO:0003824
Cca07g02427 1108 CDD C2_plant_PLD 289 441 - -
Cca07g02427 1108 Gene3D Endonuclease Chain A 498 733 - -
Cca07g02427 1108 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 619 654 IPR001736 GO:0003824
Cca07g02427 1108 MobiDBLite consensus disorder prediction 80 114 - -
Cca07g02427 1108 MobiDBLite consensus disorder prediction 13 45 - -
Cca07g02427 1108 Gene3D Endonuclease Chain A 765 1009 - -
Cca07g02427 1108 SMART pld_4 619 654 IPR001736 GO:0003824
Cca07g02427 1108 SMART pld_4 954 981 IPR001736 GO:0003824
Cca07g02427 1108 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 954 981 IPR001736 GO:0003824
Cca07g02427 1108 PANTHER PHOSPHOLIPASE D 198 1108 IPR015679 -
Cca07g02427 1108 PANTHER PHOSPHOLIPASE D ALPHA 1 198 1108 - -
Cca07g02427 1108 SUPERFAMILY Phospholipase D/nuclease 782 1040 - -
Cca07g02427 1108 ProSiteProfiles C2 domain profile. 283 418 IPR000008 -
Cca07g02427 1108 MobiDBLite consensus disorder prediction 153 181 - -
Cca07g02427 1108 Pfam C2 domain 294 420 IPR000008 -
Cca07g02427 1108 Gene3D C2 domain 289 433 IPR035892 -
Cca07g02427 1108 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 287 443 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02427 Cca-Chr7 53003668 53015671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02427 66 1108 Phospholipase D Gene Family (Wang group) AT2G42010 69.138 0.0 1473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02427 K01115 - gmx:100801286 1885.92