Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02425 ATGGCCGCCAGCATCGACATGTCCCTCGACGACATCATCAAGCAGTCCACCGCCGCAGCTTCTCGCCGCCGATTCACGGCCAGGACAACGCCGTATCCCATTCCGCCGGCACGGCCACACAGGATGATTTCGGAAATGGCTTTCCACGACGACGGCGCGGCGTTGATCGAAAGCGGCACCAAACTCTATGTGTCGAACTTGGATCGAGGAGTTTCCAACGACGATATCAAGCTGCTGTTCTCGGAAGAGGGTGAATTGAAAAGATACACCATTCATTATGACGAGAGTGGGAGATCAAAGGGAACAGCAGAAGTTGTGTTCGTGAGGTATTCTGATGCTTTAGCAGCCATCAAGAAATACAACAATATGAGGCTTGATGGAAAACCATTGCAAATTGAGCTTGTTGGAACAAGTTCAGTTACTCCTGCGGTTGCACCATCATATCAAAATAGCTTCCTCGGAAGACCAAATGATGTTCTTGTAAGCAAACAAGGAAGGGTTGGAGGTAGCATGTTCCACAATGGTTTTTCACGGGGGGCCCTTCCAAGGGGGCGTGGAGAAGAGAAGGACCATATTCGAGAGTTATCTTTTAGAGGTTTTGATCATGCATTGGAGAAGTCTCATCGCCTTCCGAGAGGCTACACAAAAGTAAAGAGAAATATTGGGAAGGTGTCTGTTAAAGATCTTGATGATGAATTGGAGAAATATCATTCCGAGGCTAAGCAGATAAAAAAGAAAATGGAAAGTGAGTGA 753 0.4728 MAASIDMSLDDIIKQSTAAASRRRFTARTTPYPIPPARPHRMISEMAFHDDGAALIESGTKLYVSNLDRGVSNDDIKLLFSEEGELKRYTIHYDESGRSKGTAEVVFVRYSDALAAIKKYNNMRLDGKPLQIELVGTSSVTPAVAPSYQNSFLGRPNDVLVSKQGRVGGSMFHNGFSRGALPRGRGEEKDHIRELSFRGFDHALEKSHRLPRGYTKVKRNIGKVSVKDLDDELEKYHSEAKQIKKKMESE 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02425 250 Coils Coil 226 246 - -
Cca07g02425 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 137 IPR000504 GO:0003723
Cca07g02425 250 SUPERFAMILY RNA-binding domain, RBD 57 144 IPR035979 GO:0003676
Cca07g02425 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 130 IPR000504 GO:0003723
Cca07g02425 250 CDD RRM_THOC4 60 134 - -
Cca07g02425 250 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 6 239 - -
Cca07g02425 250 Gene3D - 49 194 IPR012677 -
Cca07g02425 250 PANTHER THO COMPLEX SUBUNIT 4A 6 239 - -
Cca07g02425 250 SMART rrm1_1 61 133 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02425 Cca-Chr7 52965814 52967755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02425 59 135 Eukaryotic Initiation Factors Gene Family AT2G23350 36.364 1.21e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02425 K12881 - gmx:100785926 339.732