Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02421 ATGAAACATAAGCGGAATAAGACAAACCCTATCCTCACTCTGTTTCTTCTTATACTCTTCCCCGCATCGTACGCCGCCGACACAGCTTCGAGTCGTGGCAGCCACCGAGGCTCTGAGTCTGACAGCAACGCATCGCTCTCTGCTCCATCAATAATGGTGAACGTGATGGAGTGGCCGAATCAGCGTTGGCAGCCGAACAAACTCACCTACGTCAAAGTCATGACCGACGAACAACTCGAGACTCTGCGCAAGCAAATTGCCGTCTACGCAACCATCTGCGAGAACCTCATCGAGATGCACAAAACCATCTCCGCGCGCCAAGATCTCGCAGGGATTAGGATGGGAAATGTGTATTGTGATCCATTGTTGGGGTCTAGTGGGCACAAAATAGCTTCGAGGCAGAGGTGGACACCTACGGCTATGCAGCTTCAGATTTTGGAGCGGATGTTTGAGCAGGGGACTGGAACTCCCAGCAAGGAAAAGATCAAGGAGATTGCTGCTGAGCTCAGCCAGCATGGCCAGATTTCTGAGACTAATGTGTACAATTGGTTTCAAAACAGGCGGGCTCGCTCCAAAAGAAAGCAGCAGAGTGTGGGGCCTAGTGTTAATGGTGAATCAGAAGTGGAGACTGAGGTTGATTCTAAAGATAAGAAGACAAAGCCGGACGAGTTTCAGTCCCCATCTAGCGTTTCTGCGGGTCCTGCTGATAATTTGGGCTTCCAGAACACTAATAATTTGCAGTACATGAATCCAGAGTCCAACAACCCGGATTCTGTGTTCACGTCTGATGGCAGTTTAACATCCACGAGAAGTTTTGATGTGCCTGTTTTTGATGGGCTGCTATCAAACTCAAGTAGCGACTATCTTACTGGAAAAATAGAAGCACCTGAGAACTACGAGTTATACCAGTCGGCAGGCGACTACAACATGGTTGGTGGACATTCAATGTAA 951 0.4879 MKHKRNKTNPILTLFLLILFPASYAADTASSRGSHRGSESDSNASLSAPSIMVNVMEWPNQRWQPNKLTYVKVMTDEQLETLRKQIAVYATICENLIEMHKTISARQDLAGIRMGNVYCDPLLGSSGHKIASRQRWTPTAMQLQILERMFEQGTGTPSKEKIKEIAAELSQHGQISETNVYNWFQNRRARSKRKQQSVGPSVNGESEVETEVDSKDKKTKPDEFQSPSSVSAGPADNLGFQNTNNLQYMNPESNNPDSVFTSDGSLTSTRSFDVPVFDGLLSNSSSDYLTGKIEAPENYELYQSAGDYNMVGGHSM 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02421 316 Pfam Homeodomain 133 193 IPR001356 GO:0003677
Cca07g02421 316 ProSiteProfiles 'Homeobox' domain profile. 129 194 IPR001356 GO:0003677
Cca07g02421 316 PANTHER - 54 311 - -
Cca07g02421 316 SUPERFAMILY Homeodomain-like 131 196 IPR009057 -
Cca07g02421 316 PANTHER WUSCHEL-RELATED HOMEOBOX 13 54 311 IPR044559 GO:0003700
Cca07g02421 316 MobiDBLite consensus disorder prediction 224 260 - -
Cca07g02421 316 MobiDBLite consensus disorder prediction 208 223 - -
Cca07g02421 316 SMART HOX_1 131 198 IPR001356 GO:0003677
Cca07g02421 316 MobiDBLite consensus disorder prediction 190 260 - -
Cca07g02421 316 CDD homeodomain 133 195 IPR001356 GO:0003677
Cca07g02421 316 Gene3D - 134 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02421 Cca-Chr7 52934921 52942317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02421 55 312 Wox Gene Family AT4G35550 51.064 5.92e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Cca07g02421 Homeodomain 4.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02421 - - gmx:100784355 442.195