Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02420 ATGTCAGAAACTAGTCCTTCTACCATTGATATTGCAAAAATGAGAAATGCTCTTCTGTCATCTATTTCTTCAAGGCTTCACTGCTATGGAAACAATGAAGTTCAGTTAGATATTTTAGAGCGTTCCATGCAGATGAACGACCTAATAAATGACTTCAACATGGAGTCTAGAATGTTCAACAATGACAGCCAATTGGGTAAAGGAGACTATACACAGCCTAGCCAGTCTCAGTCTCTGATATATGACCACAATCATCATCCAGGTAGTCTTTATGGCATCCCAAGCAGCAAAGACATTTCTCAGCAATCATTGTTACTTGACAAGGACCCTTTTCTTTCTCAATATGAAAGAGTATATGGAAAGGCCAGAAAAAGTCCATTTGAGTACACTGGCAACATGCCCTTGTGGAAAAAAATGAAAAGCAAAATCACGATCATGGAACCGAAATGGTATCAAACAAAAGAAGTTCCAGAGATAATCCCTCCGCACAATTTGCATGTGCCCATGAAGAGAAATCAGAAGCTTAGCGATAAAGTTACAACTCTACAAAGGTTGGTTTCACCTTTTGGCAAGACCGACACTGCCTCGGTTCTTCATGAGGCTTCTATTAATATCAAGCTTCTTCAAGCACAAATCCGGACTTTGTTTCAGATGCTGAGCTTCTCTTACTTTAGTACGATTAAAGATCCCCATACACAGGAATGTGGGGACCAATTGCAGGTTGACCTAAGGAGCAGAGGACTTTGTTTGGTTCCCATATCAATCACAGAGAAAGTAACAATGGTAGACCAGATTCATCACGATTCAACCTCAAGAATTATTCACCCTTGA 831 0.4007 MSETSPSTIDIAKMRNALLSSISSRLHCYGNNEVQLDILERSMQMNDLINDFNMESRMFNNDSQLGKGDYTQPSQSQSLIYDHNHHPGSLYGIPSSKDISQQSLLLDKDPFLSQYERVYGKARKSPFEYTGNMPLWKKMKSKITIMEPKWYQTKEVPEIIPPHNLHVPMKRNQKLSDKVTTLQRLVSPFGKTDTASVLHEASINIKLLQAQIRTLFQMLSFSYFSTIKDPHTQECGDQLQVDLRSRGLCLVPISITEKVTMVDQIHHDSTSRIIHP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02420 276 CDD bHLH_AtbHLH_like 170 215 IPR045239 -
Cca07g02420 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 159 208 IPR011598 GO:0046983
Cca07g02420 276 PANTHER TRANSCRIPTION FACTOR BHLH112 41 262 - -
Cca07g02420 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 219 IPR036638 GO:0046983
Cca07g02420 276 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 41 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02420 Cca-Chr7 52931001 52934909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02420 169 276 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 44.545 1.64e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02420 - - ccaj:109812405 558.525