Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02416 ATGTCATATCAGCATAAAAGCTTTTGGATGCCACGGGATGCTGGCTGCATGGCTGAAGAAAATGTGGGATATGAAAATTCTTCAAGAATTGAACCCAAGCGTAGTCATCAGTGGTTTATGGATACAGGTGAACCAGAAATATTCAGCAACAAGAAACAAGCAGTTGAAGCTGTTAGTGGCAGGCCAATTTCAGGAGTTTCACATGTGAATGTTTCCCAATGGGACACCAATTTAGGATTTCACTCAGTCACAGGTCAATTTTCTGACCGTCTTTTTGGTTCTGATATTGCTAGGAATGTGAATTTGGTTGATAAGAACATGCCATCAATTGTAAGTGGTAATCTGAACATGGGAAGGAAGGATTTTGAGCATCAATATGGTAATGATCCTTCCGTGGGATTGTCAATATCTCATTCCATATCAGACCCTTCATGTCTCAACTTTGGTGGCATCAGAAAAGTTAAAGTGAATCAAGTCAGAGATTCTGACAACTGCATGCCTGCTGCATCCATGGGGCACTCCTATAATAGGGAAGATAATGGTGCAATTTCAGTAGCTGCTGGCTACAATAAGAATGATGGCAATATTTCGTTGGGTCCTACTTATAGCAATGGAAATGACAGCACCATTGCTATAGGGACCAGAATAAGTAAGAGTGATGACAATCTTCTTTCAATGGCTCATACCTTCAATAAAGGGGATGGGGGTTTTATGTTAATGGGCCACAATTATGGCAAGGGAGATGAAAGTATCTTATCAATGGGTCAGCCCTTTGACAAGGGAGATGGAAATTTCATATCGATGGGTCAGTCATTTGAGAAGGAAGATGGGAATTTAATATCTCTGGGCACCTCATATACCAAGGGACATGAGAGCTTTATATCAATGGGTCCATCCTATGGTAAATCAGGAGAAAATTTCATAAGCGTTGCTCCTTATGACAAGGGCACTGATCATATAATATCAATAGGTCCAACATATGACAAGGTGGATTCAAATATTGCATCAACAGTTCCATCATATGACAGAGGAGATTCTAGTTCTTTACCTGTGGGTCAAAACCACCATAAGGGTCAGAGCAGTACCATATCTTTTGGAGGTTTTCATGATGACCCTGAACCAAATCCCTCTAGTGGAATCATAAATAGCTATgatctgttgatgggaagccagaactcagctcAAGGTTTAGATAGCCAGAACGATCTGACTGAATCGAACTCTGAATCACTTGTAAATAGCATTCCAAAACCCAACACTAAAAATGATGTTGTCGTTAAGAACAAAGAGGTAAAGACAACCAAGAAGGCTCCTACTAACAACTTCCCTTCAAATGTCAAAAGTTTGCTGTCAACTGGTATTTTTGATGGTGTTCAGGTGAAATATGTTTCATGGTCACGGGAGAAAAATCTTAAAGGAATCATAAAAGGTACTGGGTATTTGTGTTCATGTGACGACTGCAAGCAGACAAAGGCTCTTAATGCGTATGAGTTTGAGCGTCATGCTGGTGCCAAGACAAAACACCCTAACAATCACATATACTTTGAGAATGGAAAAACCATATATGCTGTTGTTCAAGAGCTGAAAAACACTCCTCAGGAGATGCTTTTTGATGCAATTCAAAATGTGACTGGCTCTACCATTAACCAAAAGAACTTTCGAATATGGAAAGCATCATACCAAGCTGCTACTCGGGAGCTTCAGCGTATCTATGGAAAGGATGAAGTGGTGATTCCCTCTTGA 1743 0.3941 MSYQHKSFWMPRDAGCMAEENVGYENSSRIEPKRSHQWFMDTGEPEIFSNKKQAVEAVSGRPISGVSHVNVSQWDTNLGFHSVTGQFSDRLFGSDIARNVNLVDKNMPSIVSGNLNMGRKDFEHQYGNDPSVGLSISHSISDPSCLNFGGIRKVKVNQVRDSDNCMPAASMGHSYNREDNGAISVAAGYNKNDGNISLGPTYSNGNDSTIAIGTRISKSDDNLLSMAHTFNKGDGGFMLMGHNYGKGDESILSMGQPFDKGDGNFISMGQSFEKEDGNLISLGTSYTKGHESFISMGPSYGKSGENFISVAPYDKGTDHIISIGPTYDKVDSNIASTVPSYDRGDSSSLPVGQNHHKGQSSTISFGGFHDDPEPNPSSGIINSYDLLMGSQNSAQGLDSQNDLTESNSESLVNSIPKPNTKNDVVVKNKEVKTTKKAPTNNFPSNVKSLLSTGIFDGVQVKYVSWSREKNLKGIIKGTGYLCSCDDCKQTKALNAYEFERHAGAKTKHPNNHIYFENGKTIYAVVQELKNTPQEMLFDAIQNVTGSTINQKNFRIWKASYQAATRELQRIYGKDEVVIPS 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02416 580 MobiDBLite consensus disorder prediction 332 424 - -
Cca07g02416 580 Pfam Tify domain binding domain 473 528 IPR032308 -
Cca07g02416 580 MobiDBLite consensus disorder prediction 376 421 - -
Cca07g02416 580 PANTHER N-LYSINE METHYLTRANSFERASE 1 580 - -
Cca07g02416 580 MobiDBLite consensus disorder prediction 332 366 - -
Cca07g02416 580 PANTHER AUTOIMMUNE REGULATOR 1 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02416 Cca-Chr7 52890181 52895982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02416 431 561 PHD Transcription Factor Family AT3G53680 54.962 1.82e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02416 - - gmx:100782217 1090.49