Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02415 ATGAAGAGAGAAAGAGAGGTTGAGAACTTAACCATGGCAAATTGTTTGATGTTGCTTTCTCGTGGAAGTGATCAATTTGAAGCCACCTATTCCAACACTTCCATGaacaacaacaacaacaaccacCGTGTCTTTGAGTGCAAGACATGCAACAGGCAATTCCCTTCGTTTCAAGCACTTGGCGGCCACAGGGCTAGTCACAAAAAACCTAGGTTGATGTCTGGGGACATGGATCCTCAATTGCTTCATGATTCACCCCCAAAACCTAAGACACATGAGTGCTCCATTTGTGGGTTGGAGTTTGCCATAGGGCAAGCCTTGGGGGGCCACATGAGGAGGCATAGGGCTGCAAATTTGAATGGAATCGCACACAATTCGACAACTTTGAGTAGTAGCAGCGGTGGTAGTCGCAGTTTTGATTCTTCATCAACGAAGAAAGTTGGCGACAAGAAGATTTTGGTTTTGGATTTGAATTTGACACCCTTTGAGAATGATTTGGAGATTTTGAAGATTGGGAAGCCAACTACTTTGGTTAATTATTTTTATTAA 549 0.4171 MKREREVENLTMANCLMLLSRGSDQFEATYSNTSMNNNNNNHRVFECKTCNRQFPSFQALGGHRASHKKPRLMSGDMDPQLLHDSPPKPKTHECSICGLEFAIGQALGGHMRRHRAANLNGIAHNSTTLSSSSGGSRSFDSSSTKKVGDKKILVLDLNLTPFENDLEILKIGKPTTLVNYFY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02415 182 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Cca07g02415 182 MobiDBLite consensus disorder prediction 125 144 - -
Cca07g02415 182 SMART c2h2final6 92 114 IPR013087 -
Cca07g02415 182 SMART c2h2final6 45 67 IPR013087 -
Cca07g02415 182 Pfam C2H2-type zinc finger 44 70 - -
Cca07g02415 182 Pfam C2H2-type zinc finger 92 116 - -
Cca07g02415 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Cca07g02415 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Cca07g02415 182 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Cca07g02415 182 Gene3D Classic Zinc Finger 21 118 - -
Cca07g02415 182 MobiDBLite consensus disorder prediction 125 142 - -
Cca07g02415 182 SUPERFAMILY beta-beta-alpha zinc fingers 43 114 IPR036236 -
Cca07g02415 182 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 5 174 - -
Cca07g02415 182 PANTHER ZINC FINGER PROTEIN ZAT5 5 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02415 Cca-Chr7 52881617 52882503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02415 1 169 C2H2 Transcription Factor Family AT2G37430 44.068 8.89e-38 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca07g02415 zf-C2H2_6 9.1e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02415 - - gmx:100500371 273.092