Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02410 aTGATGGTATCGAGAGGATTGTTCGGGTGGTCCCCGCCGCACGTGCAACCGCTCACGCCGGTATCGGAGGTTTCGGAACCGCCGGAGTCGCCGTCGCCGTACCTGGACCCCGGCGCCGAGACCTCCGCGTCGCagcaggtggaggcggaggaggagatggaggagccggaggagATCGAGCCGCCGCCGGCCGCGGTGCCTTTCTCGCAGCTCTTCGCGTGTGCCGACCGCTTCGATTGGTTCCTCATGGCGTTCGGCTCCGTCGCCGCGGCGGCGCACGGCACCGCGCTCGTCATTTACTTGCACTACTTCGCCAAGATTATCCACGTGCTGCGGATGGATCCTCTGAACACCACGTCGCAGGAGCAGTTTCACAGGTTCACCGAGCTTGCTTTAACCATTGTTTATATTGCTGGGGGAGTTTTTGTTGCTGGTTGGATTGAGGTGTCATGTTGGATTTTGACGGGAGAACGGCAGACTGCTGTCATCAGATCAAAATATGTTCAAGTACTACTTAATCAAGATATGAGTTTTTTTGATACGTATGGGAATAATGGAGACATTGTGAGTCAAGTATTAAGCGATGTGCTGCTTATCCAGTCTGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTTTTCAGTGGTCTTGTCATTGGTCTTATCAATTGTTGGCAGATTGCTTTGCTAACATTAGCCACAGGTCCATTTATTGTTGCTGCTGGAGGAATATCGAATATATTCCTCCATAGGCTTGCAGAGAATATCCAAGATGCATACGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATATAAGGACATTATATGCATTTACAAATGAAACTCTGGCCAAGTATTCATATGCAACATCACTGCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTGGGATTTACATACGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCATGGAAAAGCGCATGGTGGTGAAATCATAACAGCTCTTTTTGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCGACAAATTTCTACTCATTTGATCAGGGACGAATAGCTGCTTATAGATTATTTGAGATGATAAGCCGGTCATCCTCATCTGTTAATCATGACGGCACTGCTCCTGATTCTGTGCAAGGAAATATAGAGTTTCGGAATGTTTATTTCAGCTATCTATCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTGCCTGCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCAGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGAGAAGTTCTTTTAGATGGTGAAAACATCAAGAATTTGAAACTGGAATGGCTGAGGAGCCAAATAGGTTTAGTCACTCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATGCCACTATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACATTTATCAGCTCATTAGAGAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTAGCTTTGACCGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCATCAATTCTTCTGCTTGATGAGGTTACTGGTGGACTCGATTTTGAGGCTGAGAGGGCTGTTCAGGGGGCTCTGGATTTGCTTATGCTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGGAATGCTGACTATATAGCTGTTATGGAGGAAGGTCAGCTTGTTGAAATGGGTACTCATGATGAATTATTAACCCTGGATGGCTTATATGCGGAGCTTCTTCGATGTGAAGAGGCAGCAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAAACTGCTGCCTTCCAAATTGAGAAGGATTCTTCCAGTCATAGCTTCAAAGAACCATCATCCCCTAAAATGATGAAGTCTCCCTCTCTTCAGAGAATTTCTAATGTATCCCGACTTTCAGATGCCGCCTTTAATATGCAAGAATCACCAAAAGTCAGGAGCCCACCACCTGAGAAGATGCTGGAAAATGGTCAGGCATTGGATGCAGCAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGATTGCCAGAGTTACCCAAGATTGATGTTCAATCTGTGCATCAACAAATGTCAAATGATTCTGATCCAGAATCCCCTGTTTCACCTCTTTTAACATCTGATCCTAAAAGTGAACGCTCTCATTCCCAGACTTTCAGTAGACCACATAGTCATTCTGATGATGTTTCAGTTAAAATGAAAGAAACAAAGGGTGCACAGCATCGAAAACCACCATCACTGCAGAAGCTGGCTGAGCTTAGTTTTGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAACCCCCTTCTTGCTTATGTTATCGGTCTTGTGGTGACAGCTTACTATAGAATTGATGACCATCATCACCTAGAACAGGAGGTAGACAAGTGGTGCTTGATCATTGGTTGTATGGGTATTGTGACAGTAGTTGCCAACTTTTTACAGCATTTCTACTTTGGTATTATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAGGTGGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTGTCCATGCGATTGGCCAATGATGCTACTTTTGTACGAGCTGCTTTTAGCAACAGACTATCCATATTTATACAGGACAGTGCTGCAGTTATTGTTGGTCTTTTAATTGGTGCTTTGCTGCACTGGCGGTTAGCACTTGTGGCTTTTGCAACCCTTCCAATTCTGTGTGTTTCTGCCATTGCCCAGAAATTTTGGCTTGCTGGATTTTCAAGGGGCATCCAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAATATTTACACTGTTGTGGCTTTTTGTGCTGGTAATAAGTTTCTACTTTTTGCTTGTAATGCCCTGCTACTTTGGTACACTGCAATATGTATAAAACGTGGTTACATGGATATATCTACTGCACTCAAGGAGTACATGGTTTTCTCATTTGCGACATTTGCACTTGTGGAGCCTTTTGGATTGGCTCCTTACATACTTAAACGGCGGAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTTCCCAATATTGATCCTGATGAAAGCTCTGCATTGAAGCCACCCAATGTATATGGAAGCATTGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGTCCTGAAGTGTTAGTATTGAGCAATTTTAGCCTCAAAGTCAGTGGGGGACAAACAGTTGCTATTGTGGGAGTTTCTGGGTCAGGAAAGAGCACTATAATATCTCTGATTGAGAGATTTTATGATCCAGTCGCTGGTCAAGTTTTACTGGATGGGAGGGATTTAAAGCTCTTTAACTTGAGATGGTTGAGGAGCCACCTTGGCCTTGTTCAGCAGAAACTTTTATTCTCTTAA 3633 0.428 MMVSRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDPGAETSASQQVEAEEEMEEPEEIEPPPAAVPFSQLFACADRFDWFLMAFGSVAAAAHGTALVIYLHYFAKIIHVLRMDPLNTTSQEQFHRFTELALTIVYIAGGVFVAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALLTLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTAPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATMDQIEEAAKIAHAHTFISSLEKGYDTQVGRAGLALTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAERAVQGALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKDSSSHSFKEPSSPKMMKSPSLQRISNVSRLSDAAFNMQESPKVRSPPPEKMLENGQALDAADKEPSIRRQDSFEMRLPELPKIDVQSVHQQMSNDSDPESPVSPLLTSDPKSERSHSQTFSRPHSHSDDVSVKMKETKGAQHRKPPSLQKLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYRIDDHHHLEQEVDKWCLIIGCMGIVTVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGALLHWRLALVAFATLPILCVSAIAQKFWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKFLLFACNALLLWYTAICIKRGYMDISTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPNIDPDESSALKPPNVYGSIELKNVDFCYPSRPEVLVLSNFSLKVSGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLFNLRWLRSHLGLVQQKLLFS 1210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02410 1210 PANTHER ABC TRANSPORTER B FAMILY MEMBER 20-RELATED 19 1206 - -
Cca07g02410 1210 MobiDBLite consensus disorder prediction 754 781 - -
Cca07g02410 1210 MobiDBLite consensus disorder prediction 666 689 - -
Cca07g02410 1210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1112 1207 IPR027417 -
Cca07g02410 1210 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 830 1035 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g02410 1210 MobiDBLite consensus disorder prediction 782 810 - -
Cca07g02410 1210 MobiDBLite consensus disorder prediction 675 689 - -
Cca07g02410 1210 SMART AAA_5 434 613 IPR003593 -
Cca07g02410 1210 SUPERFAMILY ABC transporter transmembrane region 817 1107 IPR036640 GO:0005524|GO:0016021
Cca07g02410 1210 MobiDBLite consensus disorder prediction 1 61 - -
Cca07g02410 1210 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 641 IPR027417 -
Cca07g02410 1210 MobiDBLite consensus disorder prediction 705 732 - -
Cca07g02410 1210 Pfam ABC transporter 428 572 IPR003439 GO:0005524
Cca07g02410 1210 Gene3D - 397 644 IPR027417 -
Cca07g02410 1210 Gene3D - 1112 1205 IPR027417 -
Cca07g02410 1210 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 382 - -
Cca07g02410 1210 Pfam ABC transporter transmembrane region 835 1075 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g02410 1210 Pfam ABC transporter transmembrane region 86 357 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g02410 1210 MobiDBLite consensus disorder prediction 754 812 - -
Cca07g02410 1210 Gene3D ABC transporter type 1, transmembrane domain 70 660 IPR036640 GO:0005524|GO:0016021
Cca07g02410 1210 Coils Coil 253 273 - -
Cca07g02410 1210 CDD ABC_6TM_Pgp_ABCB1_D2_like 825 1105 - -
Cca07g02410 1210 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 374 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g02410 1210 PANTHER ABC TRANSPORTER B FAMILY 19 1206 - -
Cca07g02410 1210 SUPERFAMILY ABC transporter transmembrane region 71 382 IPR036640 GO:0005524|GO:0016021
Cca07g02410 1210 Pfam ABC transporter 1140 1206 IPR003439 GO:0005524
Cca07g02410 1210 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 642 IPR003439 GO:0005524
Cca07g02410 1210 Gene3D ABC transporter type 1, transmembrane domain 769 1033 IPR036640 GO:0005524|GO:0016021
Cca07g02410 1210 Gene3D ABC transporter type 1, transmembrane domain 1034 1111 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02410 Cca-Chr7 52840376 52848970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02410 53 699 Calmodulin-binding Proteins AT2G36910 44.037 1.92e-169 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02410 K05658 - gmx:100789116 2192.54