Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02408 ATGGTTCACCCTATGTTTCTCCGATTTCTTCAATTGCGTTCAATGCGCACCGTTTTAGCCAACTGGGTATGGTGGGCAACGACGAAGCGTGCCACCTCTCCGCTTCCCGGAAAATGTTCTGGCGGTCGGCGTCGTGGTCGTCCTCCCGCACCGCCGCTGGAAACGCCTCTTCCGGCGAGGCGGAGAAGGGTTTCGGAGACTCCGGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGCTGACGCCTCGGTCGCAGCAGAATTGCAAGGCGCGGTCGTGCCTGCCGCCGCTGCAGCCGCTCTCCATCGCCCGCCGGAGCCTCGACGAGTGGCCGAAAGCCGGCTCCGACGACATCGGCGAGTGGCCGCAGCCGCCCACCACCCCCGGCGGAAGAGGTAATGGCAGCAACGGTGAAAGGTTGAAACTTGACTTGTCTTCGATTCAGCATAGTAACCCTGATCATAGGAGTAACAATGGTGGGCTTGTAAAAAGGGATAAAATTGCATTTTTTGATAAAGAGTGTTCAAAAGTTGCTGATCATGTGTACCTTGGTGGTGATGCTGTTGCTAGGGATAGGGACATTTTGAAGCACAATAGGATCACTCATGTGTTGAATTGTGTGGGGTTTGTGTGTCCTGAGTACTTTAAGGCTGATTTTGTTTATAGGACTTTGTGGCTGCAGGATAGTCCCTCTGAGGACATTACTAGCATTTTGTATGATGTGTTTGACTACTTTGAGGATGTTAGGGAGCTAGGTGGGAGGGTGTTTGTGCACTGTTGTCAAGGGGTGTCTAGGTCTACCTCTTTGGTCATTGCTTACCTTATGTGGAGGGAAGGACAGAGTTTTGATGATGCTTTTCAGTTTGTGAAGGCAGCGAGAGGGATCGCCGATCCAAATATGGGCTTTGCGTGTCAGTTGCTGCAGTGCCAGAAAAGGGTCCACGCTTTCCCTCTTAGTCCTAGCTCTTTGCTGAGGATGTATAGGATTGCTCCACACTCGCCCTATGATCCTTTGCATCTTGTTCCCAAAATGTTGACGGATCCTTTGTCTTCTGCATTGGACTCTAGAGGTGCGTTTATTGTGCACATACCTTCGGCGATTTATGTTTGGATTGGTAAGATTTGTGAGGCCATGATGGAGAGGGATGCTAGAGGGGCTGTGGGCCAGATTGTTCGGTATGAGAAGGTGCAAGGACCTATTGTGATGATTAAGGAAGGTGAGGAACCAGCATACTTCTGGGATGCATTTTCAAATTTTCTGCCCTTGATGGATAAATCTGGTAACAGATTTGAAGATGGCAAATCAATTGGTAAAGTTTTGCCTGGTGAGAGGAGAGTGGAGGCATATGATGTTGATTTTGAAGTGTTCAAAAAAGCAATCACGGGAGGCTTTGTGCCGCCATTTGCGTCTTCAGAGGATGACCATGAAATCCATCTTCCTGCAAGAGAGAGTAGTTGGAGTGCTTTAAGGCGTAAAGTTTCCCCTGCTAATATGAAGGAGTTTGTCACGGCCCCTAGGTTATCCTTTCCAAGGGTTTATTCAGACTCCATGTTGTGCATtcatgcatcatcaaaatcatcgccatcttcatccttgtcgtcatcctccttatcatcatcctcgtcaccatcTTATGTTTCTCCAGATTCCATTTCTTCTGATTCTAGCACCCATTCAAAGTTTTTGTCAGAATTGTCCCCGGATTCTTCCTCTGTGGTTTTGACTTCTGTTTCTCCTGTATCCTCATCTCTGGCTAATTTTTCTAATTTGTCGATCTCATCAAATTCTACTCCTCAAACAGTGTCTAACAGTACAGATATCCTTGGTGTCAAGTTATCACATCCTCTTTCTCAGTCAGCTACTTTACCATTGAAAAAGCCATCAGCTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAATCTTTGAAGTTGCCACTAATGAATGAAAAGACACAAGTAATAGATAAATCGTCGACTTTTCATGCTAGTCCAGAACATGGCATTCTTGTTAATGGTAATGTTGGCTATTCGCAACAATCAGATAGTATAGATTATATTTTTGAGTCTAACAACCATGCAAAGGATGGAGTTGTGAATTCAATTCAAAAGCATGAGCTGCCATTATGTCCAACAAGCATAGTTGATAGCATGCACCTCAAGGAATCATCCCTTCTCAGGAACTGTATTGAGCTTGTGATAGATAGTTCCCCAAGAGGAAACTTATTGCTAAGTCAGTCTACAGCATTGAAGGGAACTAAGGAGTGTGGCTTACTGCAGTATAATGTTAAACAAACTTCTGTATATCACTGGCCCAGTTTAGAAAAGATCGAGACATTTGGCGCAAGTCATTTGGATTCTAAAGCTGCTTTTGTCATATTCTCTCCAAGTACGCGTGTACATGCAGGGAACATTTTATATATTTGGGTAGGGAGGTCTTTCAATTGTGACGCTTCACAGGTTCATTTAGATGGTGATAAACAGTCAGATCATCTAGGAGCTGTTGACTGGAATCAAATTGGTTGTGATCTACTTGCTCAGTTTAGTTTTCCAAAGAATACAGTCATTAAGATTGTTAAAGAGAATGAAGAATCTACAGAGTTCCTTGCTATGCTGACTGTCTCTATGTATGGCAATTTTTCAAGCTCTAATTTGATCTTCCCTGTGAAAAGAAATCCAGTGAGGAGGTTGCTCCATGCCAAGTCAATTGTAGCTCGGCTGATTGTACAGTGCTTTAACATCCTAAACCTAGAAATTTATGTTCAATATACTCCAATTTCTTTCATATTCTCATGTTATTTAAAGAAAAAAACAATTCCTTCTTCTCTATCTCTCTAG 2964 0.4123 MVHPMFLRFLQLRSMRTVLANWVWWATTKRATSPLPGKCSGGRRRGRPPAPPLETPLPARRRRVSETPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWPQPPTTPGGRGNGSNGERLKLDLSSIQHSNPDHRSNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKHNRITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVRELGGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPLSSALDSRGAFIVHIPSAIYVWIGKICEAMMERDARGAVGQIVRYEKVQGPIVMIKEGEEPAYFWDAFSNFLPLMDKSGNRFEDGKSIGKVLPGERRVEAYDVDFEVFKKAITGGFVPPFASSEDDHEIHLPARESSWSALRRKVSPANMKEFVTAPRLSFPRVYSDSMLCIHASSKSSPSSSLSSSSLSSSSSPSYVSPDSISSDSSTHSKFLSELSPDSSSVVLTSVSPVSSSLANFSNLSISSNSTPQTVSNSTDILGVKLSHPLSQSATLPLKKPSASLAERRGSLSKSLKLPLMNEKTQVIDKSSTFHASPEHGILVNGNVGYSQQSDSIDYIFESNNHAKDGVVNSIQKHELPLCPTSIVDSMHLKESSLLRNCIELVIDSSPRGNLLLSQSTALKGTKECGLLQYNVKQTSVYHWPSLEKIETFGASHLDSKAAFVIFSPSTRVHAGNILYIWVGRSFNCDASQVHLDGDKQSDHLGAVDWNQIGCDLLAQFSFPKNTVIKIVKENEESTEFLAMLTVSMYGNFSSSNLIFPVKRNPVRRLLHAKSIVARLIVQCFNILNLEIYVQYTPISFIFSCYLKKKTIPSSLSL 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02408 987 MobiDBLite consensus disorder prediction 33 57 - -
Cca07g02408 987 MobiDBLite consensus disorder prediction 113 186 - -
Cca07g02408 987 Gene3D Severin 368 463 IPR029006 -
Cca07g02408 987 PANTHER MKPA PROTEIN 119 910 - -
Cca07g02408 987 Pfam Dual specificity phosphatase, catalytic domain 224 354 IPR000340 GO:0008138|GO:0016311
Cca07g02408 987 ProSitePatterns Tyrosine specific protein phosphatases active site. 300 310 IPR016130 GO:0016311|GO:0016791
Cca07g02408 987 SMART dsp_5 216 355 IPR020422 GO:0006470|GO:0008138
Cca07g02408 987 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 119 910 - -
Cca07g02408 987 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 210 357 IPR029021 -
Cca07g02408 987 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 275 336 IPR000387 GO:0016311|GO:0016791
Cca07g02408 987 ProSiteProfiles Dual specificity protein phosphatase domain profile. 216 358 IPR020422 GO:0006470|GO:0008138
Cca07g02408 987 SUPERFAMILY Actin depolymerizing proteins 363 472 - -
Cca07g02408 987 Gene3D Protein tyrosine phosphatase superfamily 195 358 IPR029021 -
Cca07g02408 987 CDD DSP 217 351 - -
Cca07g02408 987 MobiDBLite consensus disorder prediction 171 186 - -
Cca07g02408 987 SUPERFAMILY Actin depolymerizing proteins 816 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02408 Cca-Chr7 52793940 52798915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02408 122 252 Protein tyrosine phosphatase (PTP) family AT3G55270 70.992 1.38e-52 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02408 - - gmx:100777406 1223.76