Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02404 ATGGCTTCTTCACTAGGTCGAAGAAGAACCCACGCTCCCAAGTCATCTCCAACCCTAAACGACGACGTTTGCTGCGAGGAATGTGGCTCCGGCCACGCCCCTACGAAGCTCCTCCTCTGCGACAAATGTGACGGAGGCTACCACCTCTTCTGCCTCCGTCCCATCCTCCACTCCGTTCCCAGAGGCTCCTGGTTCTGCCCCTCTTGCTCCAATCGAAAACCCAAATCTTTTCCCCTTGTCCAGACCAAAATCATTGACTTCTTTCGGATTCAGCACTCATCGGTGACGTCGTCAAATCAAGATGCGAGGAAGAAGCGGAAGCGGGGTGGGAGCTTGGTGGTGTCTAAGAAAAAGAGGAAGCTTTTGGCGTTTGTGCCGAGTGAGGATCCGAAGAGGAGATTGGAGCAGATGGCGTCGCTGGCGACGGCGTTGACGGCAACGAAGGCGGAGTTCAGCAATGAGCTTACTTACATTCCGGGAATGGCGCCACGGTCAGCTAATTCCCCTGCTCTTGAGCGTGGTGGAATGCAGGTTATGTCAAAGGAAGACACCGAGACCTTAAACCTGTGCAGAAGTATGATGGAAAGAGGGGAATGGCCACCCCTCATGGTTGTTTTTGATCCTCTAGAAGGGTTCACTGTAGAAGCAGATAGACCCATCAAAGATTTAACTATAATAACAGAATATGTTGGAGATGTGGACTTTTTGAAGAATAGGGAAAATGATAACGGAGATAGCATAATGACACTTCTTTCAGCTTCTGATCCTTCACGTACACTTGTCATCTGTCCAGACAAACATAGCAACATAGCACGTTTCATTAACGGCATCAATAATCACACACCAGAGGGAAAAAAGAAGCAGAACTTAAAATGCGTGAGATTTAACGTTGGAGGTGAATGTCGGGTTCTTTTAATTGCCAATAGAGATATTACAAAAGGGGAAAGGTTGTACTATGACTACAATGGAGATGAACATGAATATCCAACTGAACATTTTGTCTGA 1005 0.4756 MASSLGRRRTHAPKSSPTLNDDVCCEECGSGHAPTKLLLCDKCDGGYHLFCLRPILHSVPRGSWFCPSCSNRKPKSFPLVQTKIIDFFRIQHSSVTSSNQDARKKRKRGGSLVVSKKKRKLLAFVPSEDPKRRLEQMASLATALTATKAEFSNELTYIPGMAPRSANSPALERGGMQVMSKEDTETLNLCRSMMERGEWPPLMVVFDPLEGFTVEADRPIKDLTIITEYVGDVDFLKNRENDNGDSIMTLLSASDPSRTLVICPDKHSNIARFINGINNHTPEGKKKQNLKCVRFNVGGECRVLLIANRDITKGERLYYDYNGDEHEYPTEHFV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02404 334 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 8 331 - -
Cca07g02404 334 PANTHER HISTONE ACETYLTRANSFERASE 8 331 - -
Cca07g02404 334 CDD SET_ATXR5_6-like 197 334 - -
Cca07g02404 334 Pfam PHD-finger 25 71 IPR019787 -
Cca07g02404 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 86 IPR013083 -
Cca07g02404 334 SUPERFAMILY FYVE/PHD zinc finger 15 76 IPR011011 -
Cca07g02404 334 CDD PHD_RSF1 25 69 - -
Cca07g02404 334 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Cca07g02404 334 SMART PHD_3 24 70 IPR001965 -
Cca07g02404 334 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Cca07g02404 334 ProSiteProfiles SET domain profile. 200 322 IPR001214 GO:0005515
Cca07g02404 334 Gene3D SET domain 106 334 IPR046341 -
Cca07g02404 334 SUPERFAMILY SET domain 192 325 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02404 Cca-Chr7 52728787 52731583 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02404 12 85 C2H2 Transcription Factor Family AT3G01460 29.870 2.91e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca07g02404 PHD 1.4e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02404 K24406 - gmx:100775247 609.372