Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02387 ATGGATTCTTCTTCGATCTCTCAGTTCCGCGCCACCGCGAATTCCTTTCTCTCCCAATACGAGcctctcgctctgcttctcgctcctctcctctctctcctcctcgcccactctctccgctccttcttcctcctcctccGTGACAACGCTCTCAAACCCACGCTCCTAGGGTTTCTCATTAGCTCCGCAAAATTAGTCCCTGGCGTGAAGGGATATATAGAGGCCGAAAAACGGAAGGTTGTGGATAAGATGCAATCTGATGGTAAATCTAAAAGAGAAGGTTGGAAAACCGAGTTACCAAGCACAGGATTAGGGACATCTGTCCTTGAGAAAATGACAGAGGAGAAAATAAATGATGCGGCTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGACATTTTTCTCTGATAAACGAGGCATGTTCAATGTTTGCCCATACCAATCCTCTACATTTGGATGTATTCAAGAGTGTTGCACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCACTTCTTGGAAGTAAGGAAAAGAGTTCTGGAGGACAAATATGTGGCAACATGACATCAGGCGGGACTGAAAGTATATTATTAGCTGTCAAATCATCTCGTGACTATATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATAATTCCGGAATCTGGACACTCAGCATATGACAAGGCTGCACAGTATTTTAACATCAAACTATGGCGAGTACCAGTTAACAAGAGTTTTCAAGCGGATGTGAAAGCTATACGACGTCATATTAACAAAAATACAATCTTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAATAATTGACCCCATTGAAGAACTTGGTCATCTCGCATCAAGCTTTGGTATTTGCTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTCGGGTACAACATCCCACCTTTCGATTTTTCGGTTAAAGGGGTTTCTTCAATATCAGTGGATGTGCATAAATATGGTTTAGCCCCCAAAGGAACAAGTGTAGTTCTTTATAGAAACCATGAAATCAGAAAGCATCAATTTGTTGCTGTTACTGAGTGGTCTGGTGGGTTGTATGTGTCTCCAACCATAGCCGGCAGCAGGCCTGGAAGTCTTATTGCTGGTGCGTGGGCAGCAATGATATCTCTGGGAAAAGAAGGTTACTTGAAAAATACAAAAGCAATCATGGAAGGGTCAGGAAGAATACAGAAAGGCATAGAGGAGATTACTGAGTTGTATATTGTTGGAAGACCTGACATGACAATCGTGGCTTTTGGATCAGATGTTCTGGATATATTTGAAGTCAATGATATTATGTCATCCAAGGGGTGGCATTTGAATGCATTACAGAGACCCAACAGTCTCCATATCTGCGTGACACTGCAACACGTGCCAATTGTTGAAGACTTTTTGAAGGATTTGAAGGAATCTGTGAAAATTGTGAAAGAAAATCCAGGTCCAATAAGTGGAGGGCTAGCACCTATATATGGCGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTATATGGATGGCACCTGCTAA 1614 0.4083 MDSSSISQFRATANSFLSQYEPLALLLAPLLSLLLAHSLRSFFLLLRDNALKPTLLGFLISSAKLVPGVKGYIEAEKRKVVDKMQSDGKSKREGWKTELPSTGLGTSVLEKMTEEKINDAAWQGKCSGTVYIGGSESDGHFSLINEACSMFAHTNPLHLDVFKSVARFEAEVVAMTAALLGSKEKSSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPESGHSAYDKAAQYFNIKLWRVPVNKSFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYNIPPFDFSVKGVSSISVDVHKYGLAPKGTSVVLYRNHEIRKHQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMISLGKEGYLKNTKAIMEGSGRIQKGIEEITELYIVGRPDMTIVAFGSDVLDIFEVNDIMSSKGWHLNALQRPNSLHICVTLQHVPIVEDFLKDLKESVKIVKENPGPISGGLAPIYGAAGKMPDRGMVQELLVDYMDGTC 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02387 537 PANTHER - 17 537 - -
Cca07g02387 537 PANTHER SPHINGOSINE-1-PHOSPHATE LYASE 1 17 537 - -
Cca07g02387 537 Gene3D - 97 534 - -
Cca07g02387 537 Gene3D - 134 401 IPR015421 GO:0003824
Cca07g02387 537 Gene3D Aspartate Aminotransferase, domain 1 106 500 IPR015422 GO:0003824
Cca07g02387 537 SUPERFAMILY PLP-dependent transferases 98 499 IPR015424 -
Cca07g02387 537 Pfam Pyridoxal-dependent decarboxylase conserved domain 154 442 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02387 153 497 Calmodulin-binding Proteins AT5G17330 25.414 5.58e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02387 K01634 - gmx:100794395 978.008
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02387 07 52552306 52559188 Cca07g02387 07 52552306 52559188 ECH