Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02379 ATGGCTACCACTACTGCTAGATCTTTTCTCCAAGTCGCCGCGACGGAGGAGGTTGCGCCGCCTCTCAGAGTCGTCCAGATTGAAGGACTGGTTATACTGAAGATAATTAAGCATTGCAAGGACCACTCGCCTTCTTTAGTCACTGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACCAACTGCTTCCCCTTTCCAATGAGGGAGGAGGACGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGGTGCCTGAGGGAGGTTAATGTTGACAACAATACCGTTGGATGGTACCAGTCTACATTGCTTGGCTCCTTTCAGACTGTGGAGCTTATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCAGATCAAGGTGTTCTAGCTCTGAAAGCCTTGAAGCTTTCTGACTCATTCATGGAACTCTATCGCAGCAATAATTTTACTGGAGAGAAATTGAGGGAGAAGAACTTATCATGGGTGGACATCTTTGAGGAAATACCGATCAAAGTTTCAAATTCTGCTCTTATCAGTGCTTTTATGACAGAGCTGGAACCTGATACTCCAGTCACCCAGTGTGACTATGATCGTTTGCAATTGTCAACCAGTTCATTAATGGAGAGGAATATGGAATTTTTGATTGAATGCATGGATGACTTGTCCCTAGAACAACAAAAGTTCCAATTCTACTATCGGAGCTTGTCTCGTCAACAAGCACAGCAGCAAGCATGGCTTCAAAAGAGAAGGGCGGAGAACATGGCTCGTAAAGCTGCTGGAGAAGAACCTTTGCCGGAGGAAGATCCTTCAAATCCCGTCTTCAAGCCACTCCCTGAGCCATCACGGTTGGAGAGCTTCCTCATAACTAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGTGTCAGGACAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGA 1014 0.4428 MATTTARSFLQVAATEEVAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPIKVSNSALISAFMTELEPDTPVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSLEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMARKAAGEEPLPEEDPSNPVFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02379 337 Gene3D Cytidine Deaminase, domain 2 2 213 - -
Cca07g02379 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT H 3 336 - -
Cca07g02379 337 Pfam C-terminal region of eIF3h 144 336 IPR045810 -
Cca07g02379 337 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 23 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca07g02379 337 SMART pad1_6 24 157 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca07g02379 337 CDD MPN_eIF3h 23 286 IPR027524 GO:0003743|GO:0005737|GO:0005852
Cca07g02379 337 ProSiteProfiles MPN domain profile. 25 158 IPR037518 -
Cca07g02379 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 3 336 - -
Cca07g02379 337 MobiDBLite consensus disorder prediction 269 294 - -
Cca07g02379 337 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 20 337 IPR027524 GO:0003743|GO:0005737|GO:0005852
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02379 88 337 Eukaryotic Initiation Factors Gene Family AT1G10840 84.400 1.24e-158 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02379 K03247 - gmx:100814297 645.58