Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02378 aTGACTAGTTTTCAGTTCCACTTGAGAGTTTTGAGTTTGAGTGTGTTGATTTCAGTTTCCTATTTGGTGACATGCTTGGGGAACAATGAGATGCCCGTTCAGTTGAATGATGATGTTCTTGGTTTGATTGTGTTCAAATCTGACCTTCATGACCCTTCTTCTAATCTTGCTTCATGGAATGAAGATGATGCGAATCCATGTTCGTGGCAGTTCGTGCAGTGCAATCCCGTGAGTGGAAGAGTTTCTGAGGTCTCATTGGATGGCTTAGGACTATCCGGGAAGATAGGAAGAGGCCTTGAGAAGTTGCAACATCTAACGGTATTGTCCCTTTCTCACAACAACTTGAGTGAGAGTATTAGTCCATCACTTACTCTTTCCAATAGTCTCGAGAGGCTGAACCTTAGTCACAATGCTCTTTCTGGTTCCATTCCTACTTCTCTTGTGAATATGAATTCAAtaaagtttcttgatctttcagagaattcattttcaggaccaatccctGAGAGTTTTTTTGAGAGCTGTTCTTCCCTTCGTCAAATTTCTCTAGCTAGGAACATGTTTGATGGACAAGTTCCTGGCTCACTGTATAGATGTTCCTCCTTGAATAGCCTCAATCTTTCCAATAACCGTTTTTCTGGTAATGTGGACTTCACTGGGATTTGGTCACTGAACAGGCTTAGGACTTTGGATCTATCCAACAATGACTTATCTGGGACCTTTCCTAATGGAATTTCATCCATACATAACTTGAAAGAGGTCTTGTTACAAGGTAACCAGTTTTCAGGTCCATTATCCAATGATATTGGACTCTGCCTGCATCTGATTAGGTTGGATTTTAGTGGCAATCAGTTCAGTGGAGAACTACCTGAGTCACTTGGGAGGCTTAGTTCTTTGAGCTATTTCAAGGCATCAAATAATCTTTTCACCGGTGAGTTCCATCAATGGATTGGTAACTTGACCAATCTGGAGTATCTTGAGCTCTCAAACAATCAGTTCACTGGAAGCATGCCACAGTCCATAGGGAAACTGAGATCACTGACTCATCTGAGCATTTCAAATAACAAGCTTGTTGGAACTATTCCATCATCATTAAGTTCCTGCACAAAGTTATCTGTGGTCCAGCTCAGAGGTAATGGTTTCAATGGCACAATTCCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAATAGATTTGTCTCATAATGAATTGGGAGGGTCAATTCCAGCAGGATCAAGCAGGCTTTTAGAAACTCTAACCATTTTGGATCTTTCAGATAACCATATCCAAGGGAATATTCCTGCTGAAACTGGTCTTCTTTCAAAACTAAGATATTTGAATCTGTCTTGGAATGATCTTCATTCACAGATGCCTCCAGAATTTGGCCTACTTCAGAACCTAACAGTTTTGGATCTTCGCAATAGTGCATTGCATGGTTCAATTCCAACAGATATATGTGATTCAGGCAATTTAGCTGTCCTCCAATTAGATGGAAATTCATTGGAGGGGTTTATTCCAGAGGATATTGGGAATTGTAGCTCTCTTTACTTGCTGAGTATGTCTCACAACAATTTGTCTGGCTTAATTCCAAAGTCCATGTCAAAGCTAAACAAGCTCAAAATCCTCAAGTTGGAATTCAATGAACTAAGTGGAGAGATACCAATGGAGCTAGGAATGCTTCAAAGTCTTCTGGCTGTGAACATATCATACAACAGGCTCACAGGCAGGCTTCCTGCAAGTAGCATATTTCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTTGGACTTTGCTCACCCTTGTTGAAGGGTCCATGTAAGATGAATGTCCCCAAGCCACTAGTGCTTGATCCAAATGCATATAACAACCAAATAGGTCCCCAAAGGCAAAGAAATGAATCATCTGTCGCCGGCCCGGTCCATCGCCACAGATTCCTTAGTGTATCTGCTATTGTAGCTATATCTGCATCCTTTGTCATTGTATTAGGAGTGATTGCTGTTAGCCTTCTCAATGTTTCTGTAAGGAGAAGGCTAACATTTGTGGACAATGCTTTGGAAAGCATGTGCTCAAGCTCTTCAAGATCAGGAAGTCCAGCCACAGGAAAGCTTATTCTGTTTGATTCCCAGTCCTCACCTGATTGGATCAGCAATCCTGAGTCCTTGCTCAACAAGGCATCTGAGATTGGAGAAGGAGTCTTTGGAACACTCTACAAGGTTCCATTGGGATCACAAGGTAGAATGGTGGCAATCAAGAAGCTTATATCCACAAACATAATTCAATATCCAGAAGACTTTGATAGGGAAGTTAGAATCCTAGGGAAAGCAAGACACCCTAATCTAATAGCATTGAAAGGATACTATTGGACTCCTCAATTACAGCTTCTAGTAACTGAGTATGCACCAAATGGTAGCTTGCAATCCAAGCTACATGAAAGGCTTCCTTCAAGTCCACCTCTTTCTTGGGCCACAAGATTCAAAATTTTGCTTGGAACAGCAAAGGGGCTTGCTCATTTGCACCACTCTTTCCGTCCACcaatcatccactacaacataaagccaagtaacatcttgcttgatgaaaatcacagtcctaagatctcggattttggcttggcgaggcttctgacaaaattggacaggcatgtgatgagcaataggtttcagagtgcattaggatatgtggcaccagaattggcatgtcagagcctaagggtgaatgagaaatgtgatgtgtatggttttggagtgatgatccttgagcttgtgacaggtaggaggccagTGGAGTATGGTGAGGACAATGTGCTGATATTGAACGATCATGTGAGGGTGCTGCTTGAGCAAGGTAATGTGTTGGAGTGTGTGGATCAAAGCATGAGTGAGTATCCAGAAGATGAGGTGTTGCCTGTTCTGAAGCTAGCAATGGTGTGCACCTCTCAGATTCCTTCTAGCAGGCCTACTATGGCTGAAGTGGTGCAAATACTGCAGGTCATTAAAACCCCAGTTCCTCAAAGGATGGAAGTGTTTTGA 3030 0.3805 MTSFQFHLRVLSLSVLISVSYLVTCLGNNEMPVQLNDDVLGLIVFKSDLHDPSSNLASWNEDDANPCSWQFVQCNPVSGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLSESISPSLTLSNSLERLNLSHNALSGSIPTSLVNMNSIKFLDLSENSFSGPIPESFFESCSSLRQISLARNMFDGQVPGSLYRCSSLNSLNLSNNRFSGNVDFTGIWSLNRLRTLDLSNNDLSGTFPNGISSIHNLKEVLLQGNQFSGPLSNDIGLCLHLIRLDFSGNQFSGELPESLGRLSSLSYFKASNNLFTGEFHQWIGNLTNLEYLELSNNQFTGSMPQSIGKLRSLTHLSISNNKLVGTIPSSLSSCTKLSVVQLRGNGFNGTIPEGLFGLGLEEIDLSHNELGGSIPAGSSRLLETLTILDLSDNHIQGNIPAETGLLSKLRYLNLSWNDLHSQMPPEFGLLQNLTVLDLRNSALHGSIPTDICDSGNLAVLQLDGNSLEGFIPEDIGNCSSLYLLSMSHNNLSGLIPKSMSKLNKLKILKLEFNELSGEIPMELGMLQSLLAVNISYNRLTGRLPASSIFQNLDKSSLEGNLGLCSPLLKGPCKMNVPKPLVLDPNAYNNQIGPQRQRNESSVAGPVHRHRFLSVSAIVAISASFVIVLGVIAVSLLNVSVRRRLTFVDNALESMCSSSSRSGSPATGKLILFDSQSSPDWISNPESLLNKASEIGEGVFGTLYKVPLGSQGRMVAIKKLISTNIIQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVTEYAPNGSLQSKLHERLPSSPPLSWATRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENHSPKISDFGLARLLTKLDRHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEQGNVLECVDQSMSEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02378 1009 SUPERFAMILY RNI-like 131 552 - -
Cca07g02378 1009 Gene3D Ribonuclease Inhibitor 38 193 IPR032675 -
Cca07g02378 1009 Pfam Leucine Rich Repeat 226 246 IPR001611 GO:0005515
Cca07g02378 1009 Pfam Protein kinase domain 724 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02378 1009 CDD STKc_IRAK 728 996 - -
Cca07g02378 1009 ProSiteProfiles Protein kinase domain profile. 722 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02378 1009 PANTHER BNAA09G02190D PROTEIN 11 1007 - -
Cca07g02378 1009 ProSiteProfiles Leucine-rich repeat profile. 418 440 IPR001611 GO:0005515
Cca07g02378 1009 ProSiteProfiles Leucine-rich repeat profile. 104 126 IPR001611 GO:0005515
Cca07g02378 1009 SMART LRR_typ_2 440 463 IPR003591 -
Cca07g02378 1009 SMART LRR_typ_2 224 248 IPR003591 -
Cca07g02378 1009 SMART LRR_typ_2 416 439 IPR003591 -
Cca07g02378 1009 SMART LRR_typ_2 464 488 IPR003591 -
Cca07g02378 1009 SMART LRR_typ_2 320 343 IPR003591 -
Cca07g02378 1009 SMART LRR_typ_2 344 368 IPR003591 -
Cca07g02378 1009 SMART LRR_typ_2 102 126 IPR003591 -
Cca07g02378 1009 SMART LRR_typ_2 560 585 IPR003591 -
Cca07g02378 1009 Gene3D Ribonuclease Inhibitor 194 316 IPR032675 -
Cca07g02378 1009 SUPERFAMILY Protein kinase-like (PK-like) 725 1003 IPR011009 -
Cca07g02378 1009 ProSitePatterns Protein kinases ATP-binding region signature. 728 752 IPR017441 GO:0005524
Cca07g02378 1009 Gene3D Phosphorylase Kinase; domain 1 722 803 - -
Cca07g02378 1009 Gene3D Ribonuclease Inhibitor 322 609 IPR032675 -
Cca07g02378 1009 Gene3D Transferase(Phosphotransferase) domain 1 804 1006 - -
Cca07g02378 1009 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Cca07g02378 1009 Pfam Leucine rich repeat 306 357 IPR001611 GO:0005515
Cca07g02378 1009 Pfam Leucine rich repeat 490 549 IPR001611 GO:0005515
Cca07g02378 1009 SMART LRR_sd22_2 224 253 - -
Cca07g02378 1009 SMART LRR_sd22_2 320 349 - -
Cca07g02378 1009 SMART LRR_sd22_2 416 448 - -
Cca07g02378 1009 SMART LRR_sd22_2 102 121 - -
Cca07g02378 1009 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 11 1007 - -
Cca07g02378 1009 PRINTS Leucine-rich repeat signature 227 240 - -
Cca07g02378 1009 PRINTS Leucine-rich repeat signature 320 333 - -
Cca07g02378 1009 Pfam Leucine Rich repeat 441 453 IPR001611 GO:0005515
Cca07g02378 1009 Pfam Leucine Rich repeat 418 431 IPR001611 GO:0005515
Cca07g02378 1009 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02378 Cca-Chr7 52461569 52465176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02378 10 1006 Receptor kinase-like Gene Family AT3G28040 63.654 0.0 1253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Cca07g02378 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02378 - - gmx:100813764 1811.58