Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02373 ATGGCAGATAATGTTGTTAGCTTCTTGCTAGAAAACTTGACACGACTGCTTAACGATGAAGTCAAGTTGCTTTTTGGCGTGGAGGAGAAAGTCAATTTCCTGGCCAATGAGCTCCAGTTTATCAACATCTTCCTCAAGAGCTCTGAGGGGAAGCGCAGTGATCAAGTAGTGAAACAAGTGGTGAGCCAAATAAGAGATGTTGCCTACAAAGCTGAAGATGTGGTTGACACTTATGTTACCAACATCTCCAAACACAAAAACAGAAACATACTTAGCAAGTTATTCCACGGAAAAAATCAAGTCATTCTGCTACATGAAGTTAACACTGAGATAGAGAATATCAAAAGTCAAATTGATGAGATTTATAAGAACAAGGAGAGATATGGAATTGAACAAGGCGAATTCCAAAGGGAAGAAGCTGCTGCAGCAGAATCACTCCGCAGAAGAAGGAGGGATGTGGAGGAAGAAGACGTGGTGGGCTTCGTGCATGACTCCAGCGTTGTCATTCAGCAACTGAAGGAAAGTGATTTGCGCCTTAAAGTTGTTTCCATAATCGGCATGGGAGGGCTAGGCAAGACCACTCTTGCTCGAAAGATCTATAACAATCATGAGGTGAACACGTTGTTTCCTTGTCGTGCATGGGGTTATGTGTCTAACGATTACCGACCTATGGAGCTTTTACTTAGCCTTCTCAAGTGTTTAAGTTCATCCATTTCTGAACGGGAAAATTTAAGTGAGGAAGATTTGAAGAATAAGGTGGCAGCAGAGTTGAAGGAGAAAAAGTATCTGATAGTGCTTGATGACATCTGGAATTCCCAAGTGTGGGATGAAGTTAAAGGTGCCTTTCCAGATGACAAAACAGGTAGCAGAATACTCATAACAAGTCGTACAAATGAGATGGTTCACTGTACAAGAACCACATCTCCCCACTACCTTCCTGTTCTAAATGAAGATGAAAGTTGGGAACTATTTTCTAAGAAGGTGTTTCGAGATGAGCAATGCCCTCCTTATTTAGAGCCTCTGGGCAGATCCATTGTCGAAACTTGCAAGGGTTTACCGCTTGCCATTGTGGTCTTAGCTGGACTCGTTGCCAAGAAGGAGAGGTCACAAAGAGAATGGAAGAGAATAAAGCATGAAATTTTGCATCATACTCGAGTGAGGGATATACTGAAGCTCAGCTATGACAGCTTACCTTCAAGCTTAAAGCATtgctttctatattttggaatctatcctgaagactatgagatcaatgtaaaggaagtgatgcaactatggatagctgaagggttcatacaaaaagaaaagccaaatgcatcagaagaattggAAGATGTTGCAGACAGATACTTGGATGATCTGGTGGATCGCAGCTTAGTACAAGTGGCAAAAAAGAGGAGTGATGGTGGTGTCAAGACATGCCGGATTCACGATCTTCTTCGCGAATTCTGCATATCAGAAAGCTCAAATAATAAGTTTCTAGAGGTTTGCAAAGAGTCCAATGTTGATAACTTGAGAAATTTAAATCCCCGTAGATTGTCCTTCCACTGCCAACCACCCTCTTATATTTTTGTAGACACATTTCAAAATCCATGCACCCGTTCCGTGTTCATATTTCCTGAAGCAAGCATAGATTATTACTCTATGAAAAGTTTCGAGTTGGCTCGTGTGCTACATTTACCATTTTATTCACTACCCATCAATTTGAAGAGGATGATCCATCTAAGGTACCTGAAAATACACTCTGGAGACCTTCCAACTTCTATAAGCTGCCTTTGGAATCTAGAAACACTATATATATATCGAACACGGAAACTATCTAGTGGAATTTGGAAGCTCAAGCAACTGAAACATCTTCATTTAAGTGTGAGTAAGTTACCAAAAGCAAGTGGGGAAAGAATGGAGAATCTCCAAACCCTTTGGTTAAAGACTGAGGATGAACAAATGATTTCCAAGCTGAAAAATGTAATGTTTCCAAGGTTGAGAAAATTAACTTTACTCACTAACCCTTGGCATGGATATCCTTCTCAATCCCTGCTTTTGGAAGAATTACCAAGTCTACACCAGCTAAGCAATCTTTGGAGCCTAAACATAATGTTTCACCTTGCACAACTTTCATACTCCAAAGCATTTCCATCAAATCTTACCAAGATAAGCTTGAAACTACCATTTGAAGTTGAATGCCACCATTTGATGAACACATTAGGAGGGCTCCCCAACCTACAAATTTTGAAGCTAACTGATGATGGACACTTTGTTTTTATACAATTTGACCTTCATATTGGCATTGGAAAATTCACGCAGCTTCAAGTGTTGCATATGAGGGGAATAAGCATCAATTCGTGGATATTAGAGGAAGGTGCAATGCCTTGTCTTCAACATCTGTTCATGAAAAGATGCCATTATTCGTCTGGGCTTGTTGAACAACTTCGTTTTGAGTTCAGGAATGGTTGTAAGATTATAATACAGGATTGGTGA 2478 0.385 MADNVVSFLLENLTRLLNDEVKLLFGVEEKVNFLANELQFINIFLKSSEGKRSDQVVKQVVSQIRDVAYKAEDVVDTYVTNISKHKNRNILSKLFHGKNQVILLHEVNTEIENIKSQIDEIYKNKERYGIEQGEFQREEAAAAESLRRRRRDVEEEDVVGFVHDSSVVIQQLKESDLRLKVVSIIGMGGLGKTTLARKIYNNHEVNTLFPCRAWGYVSNDYRPMELLLSLLKCLSSSISERENLSEEDLKNKVAAELKEKKYLIVLDDIWNSQVWDEVKGAFPDDKTGSRILITSRTNEMVHCTRTTSPHYLPVLNEDESWELFSKKVFRDEQCPPYLEPLGRSIVETCKGLPLAIVVLAGLVAKKERSQREWKRIKHEILHHTRVRDILKLSYDSLPSSLKHCFLYFGIYPEDYEINVKEVMQLWIAEGFIQKEKPNASEELEDVADRYLDDLVDRSLVQVAKKRSDGGVKTCRIHDLLREFCISESSNNKFLEVCKESNVDNLRNLNPRRLSFHCQPPSYIFVDTFQNPCTRSVFIFPEASIDYYSMKSFELARVLHLPFYSLPINLKRMIHLRYLKIHSGDLPTSISCLWNLETLYIYRTRKLSSGIWKLKQLKHLHLSVSKLPKASGERMENLQTLWLKTEDEQMISKLKNVMFPRLRKLTLLTNPWHGYPSQSLLLEELPSLHQLSNLWSLNIMFHLAQLSYSKAFPSNLTKISLKLPFEVECHHLMNTLGGLPNLQILKLTDDGHFVFIQFDLHIGIGKFTQLQVLHMRGISINSWILEEGAMPCLQHLFMKRCHYSSGLVEQLRFEFRNGCKIIIQDW 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02373 825 Gene3D Ribonuclease Inhibitor 537 818 IPR032675 -
Cca07g02373 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 408 IPR027417 -
Cca07g02373 825 SUPERFAMILY L domain-like 468 807 - -
Cca07g02373 825 Pfam NB-ARC domain 168 405 IPR002182 GO:0043531
Cca07g02373 825 CDD RX-CC_like 2 121 IPR038005 -
Cca07g02373 825 Gene3D - 5 117 - -
Cca07g02373 825 Pfam Rx N-terminal domain 5 88 IPR041118 -
Cca07g02373 825 Gene3D - 138 308 IPR027417 -
Cca07g02373 825 PANTHER DISEASE RESISTANCE PROTEIN RP 44 801 IPR044974 GO:0006952
Cca07g02373 825 Coils Coil 104 124 - -
Cca07g02373 825 Coils Coil 136 156 - -
Cca07g02373 825 Gene3D - 314 398 IPR042197 -
Cca07g02373 825 PANTHER - 44 801 - -
Cca07g02373 825 Gene3D - 399 486 IPR036388 -
Cca07g02373 825 PRINTS Disease resistance protein signature 181 196 - -
Cca07g02373 825 PRINTS Disease resistance protein signature 256 270 - -
Cca07g02373 825 PRINTS Disease resistance protein signature 349 363 - -
Cca07g02373 825 PRINTS Disease resistance protein signature 736 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02373 Cca-Chr7 52401912 52405242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02373 170 741 WRKY Transcription Factor Family AT5G45050 22.848 1.36e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02373 - - gmx:100787796 892.878