Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02370 ATGGCAGCAGCGTTCCAGGAAAACGGCGCCGCCGGGGAGGACGACGCGACTGTCGACGTGCACGCCACGCGGGGAACCCCCATCCGCTACCTCCCGCTCGACCACCTCTACTCCGCCACCTCGCCGTGCCGCGTCGCCGCCAGCGGCTCCTCCAACGTCATGTCGAAGAAGGTGAAAGCGCGCAAGCTCACGCTCGCGCATTTCGCCGATCACCACAGGAAAAcgacgtcgtcgccgccgacgtcgtcctcgCTCCCGCCCAAGCCCCCGCTCCTGTTCGTCTACTCGCGCCGCCGCAAGAGGCGTGCCGATAGCGACGCCGACAGGAGGCTGCTGAAGAAGAGGAAAATTGGGAGCACCGAGCTGGAGAGGCTCGGCGGGGGTTTGAATGCTGCGGTTGGGGACGCGGATGGGCCTCGTTGGAGGGAATGCCGGAGCCAATTTGGGAATTCCGGTGCTGCTGGGAATGTTAAGTGTGGTTCCTTGGAGAATTTGCCCAAACTGTTGCCTGAATCTCGCGCTGTCAAGAAATGGGTTGGGTTGAGTTTTGATGATGCTGATCCTGAGGCGTTTGTTGGCTTACGATGCAAGGTTTACTGGCCCATGGATTTGAAGTCGTACACTGGCTATGTCAGAAGTTATGATAAGGAAACTAAGATACATCATGTCAAGTATGATGATGGTGATGAGGAAAATTTAATTCTTTCAAATGAAAATATAAGATTCCACGTTTCCCGCGATGAGATGAAACATTTAAAATTGAGTTTTGCAAAAGTTCGTGACAATAATGTCTCTGATTATGATGTTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGTCAAGACTTTGAGCCTGGGGATATCATATGGGCAAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTGGATGAATCACTTGCTAGCAACTGTAAGGGTTTGAAGATGTTTTTGGGAGGAAGATCAGTTCCTGTCCAATTTTTTGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTAAGTGGACTTCTTACTGAACTACACTCAAAATGCAAGAAACATAGTTTTATTGAAGGTTTAGAAGAGGCAAAAAGATATTTAAGTGAACAGAAGCTTCCGTTGGAGATGCTAGAGTTGCAGAAAAGATGTACAGCTGATGACTGTAACAATGCAAGTGGAGAGGAGGGAGGGTGTACAGATTCAGGTGATGATTGTTTAAATGACAAGGGGACTTTGATGGCTCTGGAAAACAGTGAAACTTTTCCTTATGAAGTAGGAGACCTCCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTGCATTCGGGGATGGAAGATTAATCTGGCCCGAAGGGTACATGGCAGTGAGGAAGTTTACTTCAGTTACTGACCCTAAAGTTTCTGCTCCTTATAAGATGGAGGTGTTGAGAGATCCAGAATCCAAAGTCCGTCCTCTCTTTAGAGTAACAGTTGATGGTGGTGAGCAGTTCAATGGTTATACACCATCTGCTTGCTGGGGTGAGGTATATAAAAGGATAAAGAAAATGGAAAAGGATGCTTCTGAAGGTATTGTTGCTGAAGGTGGGGTGGAAAAGGGCTACGAATCTGGGTCTGATATGTTTGGGTTCTCCAACCCTAAAGTAGTTAAACTTATACAGGGCTTGTCTAAATCCAAAATCTCTTCAAAGAACTCGAGTTACAAGCTAGGTTCCAGAGGATATAATAACTTGCCTCTTGGTTATAGACAAGTTCATATTAACTGGTTTGACCTCGATAAGTGCAATGTGTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCCAGATGCTATGGAGAACTAGAACCTGTTAATGGAGTGCTCTGGTTATGCAACTTATGTCGTTCGGGTGCTCCTCCTCCACCTTGCTGCTTATGTCCTCTCATAGGTGGTGCAATGAAGCCTACTACGGATGGCCGGTGGGCTCATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTAAAGAGAATGGAGCCTATTGATGGTTTGAGTAGAATCAGTAAGGACCGCTGGAAGTTGTTATGCAGCATATGTGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAGTTCTTGTCGAGTAGCTTATCATCCACTCTGTGCACGCGCCGCTGGTCTCTGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATACGCTTACTTTCTTTCTGCAAGAAACATAGGCAGCCATCTAATGAACATTCTGTTGCCGATGAACGTATTGTTCGAGTTGCTGGTCAATGTTCAGACTATGAGCCACCACCTAATCCGTCTGGTTGTGCTCGAAGTGAACCATATGATTACTTTGGCAGGAGAGGTCGAAAAGAACCTGAAGCACTTGCAGCTGCATCATTAAAACGTTTGTTTGTGGAGAATCAACCTTACTTAGTAGGTGGATACTGCCAGCATGGATCATTAGACAACCTAGAGTCTTGTGGCAGAGGTGTCTGCTCCAAATTCTTTTGTAGCCAACAAAGGCTGAGAACCTCTCTGATTGATGCTTCTAACAGCATACTGTCTATCTCTGAAAAATATAAGTATATGAGGGAAACTTTTCGGAAACGGCTGGCATTTGGGAAATCAAGGATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGAGACATGGTGATTGAATACACTGGCGAACTTGTTAGACCACCTATAGCTGATAGGAGAGAGCACTTCATATATAATTCATTGGTGGGTGCTGGAACATATATGTTTCGGATTGATGATGAACGGGTCATTGATGCTACTAGAGCTGGAAGCATTGCTCATTTAATTAATCATTCTTGTGCACCAAATTGCTATTCAAGAGTTATAAGTGTTAATGGCGATGAGCATATTATAATATTTGCAAAGAGGGACATTAAACAATGGGAAGAGCTTACATATGATTATAGATTTTTCTCAATTGATGAACGGCTTGCTTGTTACTGTGGTTTCCCAAAATGCCGAGGTGTAGTAAATGATACTGAGGCAGAAGAACGAGCTGCTACCCTATATGCACCACGAAGTGAACTAATAGATTGGAGAGGAGAGTGA 3204 0.4479 MAAAFQENGAAGEDDATVDVHATRGTPIRYLPLDHLYSATSPCRVAASGSSNVMSKKVKARKLTLAHFADHHRKTTSSPPTSSSLPPKPPLLFVYSRRRKRRADSDADRRLLKKRKIGSTELERLGGGLNAAVGDADGPRWRECRSQFGNSGAAGNVKCGSLENLPKLLPESRAVKKWVGLSFDDADPEAFVGLRCKVYWPMDLKSYTGYVRSYDKETKIHHVKYDDGDEENLILSNENIRFHVSRDEMKHLKLSFAKVRDNNVSDYDVEEMLALAASLDDCQDFEPGDIIWAKLTGHAMWPAVVLDESLASNCKGLKMFLGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTELHSKCKKHSFIEGLEEAKRYLSEQKLPLEMLELQKRCTADDCNNASGEEGGCTDSGDDCLNDKGTLMALENSETFPYEVGDLQILSLGKIVEDSAFGDGRLIWPEGYMAVRKFTSVTDPKVSAPYKMEVLRDPESKVRPLFRVTVDGGEQFNGYTPSACWGEVYKRIKKMEKDASEGIVAEGGVEKGYESGSDMFGFSNPKVVKLIQGLSKSKISSKNSSYKLGSRGYNNLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLSRISKDRWKLLCSICGVSYGACIQCSNSSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSNEHSVADERIVRVAGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHGSLDNLESCGRGVCSKFFCSQQRLRTSLIDASNSILSISEKYKYMRETFRKRLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPPIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLACYCGFPKCRGVVNDTEAEERAATLYAPRSELIDWRGE 1067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02370 1067 SMART set_7 903 1027 IPR001214 GO:0005515
Cca07g02370 1067 SUPERFAMILY Tudor/PWWP/MBT 281 382 - -
Cca07g02370 1067 Pfam F/Y-rich N-terminus 434 483 IPR003888 GO:0005634
Cca07g02370 1067 SUPERFAMILY SET domain 881 1040 IPR046341 -
Cca07g02370 1067 Pfam F/Y rich C-terminus 492 565 IPR003889 GO:0005634
Cca07g02370 1067 ProSiteProfiles Post-SET domain profile. 1027 1043 IPR003616 -
Cca07g02370 1067 Gene3D - 429 568 - -
Cca07g02370 1067 Pfam PWWP domain 288 375 IPR000313 -
Cca07g02370 1067 SMART PostSET_3 1027 1043 IPR003616 -
Cca07g02370 1067 ProSitePatterns Zinc finger PHD-type signature. 602 647 IPR019786 -
Cca07g02370 1067 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 18 1064 - -
Cca07g02370 1067 ProSiteProfiles PWWP domain profile. 287 350 IPR000313 -
Cca07g02370 1067 SMART fyrn_3 442 486 IPR003888 GO:0005634
Cca07g02370 1067 ProSiteProfiles Extended PHD (ePHD) domain profile. 653 777 IPR034732 -
Cca07g02370 1067 CDD PHD_ATX1_2_like 601 647 IPR042010 -
Cca07g02370 1067 CDD ePHD_ATX1_2_like 662 776 IPR041956 -
Cca07g02370 1067 SMART PHD_3 711 777 IPR001965 -
Cca07g02370 1067 SMART PHD_3 601 648 IPR001965 -
Cca07g02370 1067 Pfam PHD-zinc-finger like domain 655 776 - -
Cca07g02370 1067 Gene3D - 189 243 - -
Cca07g02370 1067 Gene3D - 275 386 - -
Cca07g02370 1067 ProSiteProfiles Zinc finger PHD-type profile. 599 650 IPR019787 -
Cca07g02370 1067 SMART fyrc_3 494 588 IPR003889 GO:0005634
Cca07g02370 1067 Pfam PHD-finger 614 648 - -
Cca07g02370 1067 ProSiteProfiles FYR domain FYRN motif profile. 428 486 IPR003888 GO:0005634
Cca07g02370 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 647 IPR013083 -
Cca07g02370 1067 ProSiteProfiles FYR domain FYRC motif profile. 490 577 IPR003889 GO:0005634
Cca07g02370 1067 MobiDBLite consensus disorder prediction 69 91 - -
Cca07g02370 1067 Gene3D SET domain 848 1055 IPR046341 -
Cca07g02370 1067 Pfam SET domain 914 1020 IPR001214 GO:0005515
Cca07g02370 1067 PANTHER PHD FINGER PROTEINS 18 1064 - -
Cca07g02370 1067 SMART PWWP_4 285 348 IPR000313 -
Cca07g02370 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 779 IPR013083 -
Cca07g02370 1067 SUPERFAMILY FYVE/PHD zinc finger 593 663 IPR011011 -
Cca07g02370 1067 CDD SET_SETD1-like 891 1039 - -
Cca07g02370 1067 ProSiteProfiles SET domain profile. 903 1021 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02370 Cca-Chr7 52339751 52352712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02370 602 747 C2H2 Transcription Factor Family AT3G14740 39.735 5.69e-27 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca07g02370 zf-HC5HC2H_2 3.8e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02370 - - gmx:100808923 1984.53