LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g02365	ATGTATTCTCTTTGGAGTTCCATTGCAATGTGTGTAGCACTTCTACTCCTTCAGTTTGGCACTGTACACCCCTCACCCTCTCACCTTAGGATCAATCGCTTACCGGGTCAACCCCATGTTGAATTTCATCAGTTTTCAGGCTATATAACCGTTGATGGCAAAAACCAGCGAGCACTCTTTTTCTACTTCGCTGAAGCTGAAAAAGATGCACTTTCCAAGCCCCTTGTTCTTTGGCTCAATGGAGGGCCTGGTTGTTCTTCTCTTGGAGTTGGTGCATTTTCAGAGAATGGACCATTTAGGCCCAAAGGAGAGGCCTTGGTTAGGAATCAATTCAGCTGGAACAGAGAAGCAAATATGTTGTATTTGGAAACGCCAATTGGAGTTGGATTCTCTTACTCAACTGACACTTCCTCTTATGAGGGTGTGAATGACAAGATTACAGCCAGGGATAACTTGGTGTTCTTGCAAAACTGGTTTGTCAAGTTCCCAGAATACAGAAACAGAAGTTTGTTCATTGTAGGAGAAAGCTATGCAGGCCATTATGTTCCTCAACTGGCTGAGCTTATGCTCCGATTCAACAAAAAGGAGAAGTTATTCAATTTAAAAGGCGTTGCTCTTGGTAATCCAGTTCTAGAATTTGCAACAGATTTCAATTCCAGAGCTGAGTTCTTCTGGTCACATGGATTAATTTCAGACACAACGTTCAAAATGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATACTATAATGGTGCTGTTTCTCCTATCTGTTCAAGTGTTATGAACCAAGTTAGTACAGAAACAAGTAGATTTGTTGACAAGTATGATGTGACCCTTGATGTTTGTTTATCTTCTGTGTTTTCACAAACTAAAGTCCTCAATCCCCAGCAAGTCACTGAAACTATAGATGTGTGCGTGGAAGATGAAACAGTGAATTATCTGAACAGGAAAGATGTGCAGTCAGCTTTACATGCACGTCTTGTTGGAGTTCAAAGATGGTCTGCTTGCAGCAATGTGCTGGATTATGAGCTGGGTGACTTGGAGATACCAACAATCACGGTTGTGGGGAAGCTTGTCAAGGAGGGAATACCAGTATTGGTTTACAGTGGTGATCAGGATTCAGTTATCCCTCTAACTGGAAGTAGAACATTAGTACATAAACTGTCAAAAGAACTAGGGTTGAAGACCACTGTGCCATACAGGGTGTGGTTTGAGAGGCAGCAGGTGGGTGGGTGGACTCAAGTTTATGGTAACATCCTTTCATTTGCCACTATCAGGGGAGCATCACATGAGGCTCCATTTTCACAGCCTGAGAGATCACTTGTGCTATTCAAGTCCTTCTTAGAAGGACGCCCTCTACCACAAGAGTTTTGA	1383	0.4244	MYSLWSSIAMCVALLLLQFGTVHPSPSHLRINRLPGQPHVEFHQFSGYITVDGKNQRALFFYFAEAEKDALSKPLVLWLNGGPGCSSLGVGAFSENGPFRPKGEALVRNQFSWNREANMLYLETPIGVGFSYSTDTSSYEGVNDKITARDNLVFLQNWFVKFPEYRNRSLFIVGESYAGHYVPQLAELMLRFNKKEKLFNLKGVALGNPVLEFATDFNSRAEFFWSHGLISDTTFKMFTSVCNYSRYVREYYNGAVSPICSSVMNQVSTETSRFVDKYDVTLDVCLSSVFSQTKVLNPQQVTETIDVCVEDETVNYLNRKDVQSALHARLVGVQRWSACSNVLDYELGDLEIPTITVVGKLVKEGIPVLVYSGDQDSVIPLTGSRTLVHKLSKELGLKTTVPYRVWFERQQVGGWTQVYGNILSFATIRGASHEAPFSQPERSLVLFKSFLEGRPLPQEF	460

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g02365	460	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	5	458	IPR001563	GO:0004185\|GO:0006508
	Cca07g02365	460	Gene3D	alpha/beta hydrolase	27	287	IPR029058	-
	Cca07g02365	460	SUPERFAMILY	alpha/beta-Hydrolases	32	457	IPR029058	-
	Cca07g02365	460	ProSitePatterns	Serine carboxypeptidases, serine active site.	172	179	IPR018202	GO:0004185
	Cca07g02365	460	Gene3D	-	308	344	-	-
	Cca07g02365	460	Pfam	Serine carboxypeptidase	36	453	IPR001563	GO:0004185\|GO:0006508
	Cca07g02365	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	109	121	IPR001563	GO:0004185\|GO:0006508
	Cca07g02365	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	122	132	IPR001563	GO:0004185\|GO:0006508
	Cca07g02365	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	158	183	IPR001563	GO:0004185\|GO:0006508
	Cca07g02365	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	423	436	IPR001563	GO:0004185\|GO:0006508
	Cca07g02365	460	PANTHER	CARBOXYPEPTIDASE	5	458	-	-
	Cca07g02365	460	Gene3D	-	355	453	-	-
	Cca07g02365	460	ProSitePatterns	Serine carboxypeptidases, histidine active site.	423	440	IPR033124	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g02365	Cca-Chr7	52263808	52267351	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g02365	316	456	Calmodulin-binding Proteins	AT2G22960	27.660	4.32e-15	71.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g02365	K16297		-	gmx:100789658	885.945