Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02363 ATGCAATTCGCTAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCGCTAAGAGATAGAAGTTTAAAATTTTACAAAGGATGTAGAAAGTACACTGAAGGACTTGGGGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGTGGGCATAATGACCCAATTAGTGTGGCTTTTGGAGGACCTGTTATGACCAAATTCACCATAGCCTTAAGAGAAATTGGGACATACAAGGAAGTCCTTCGATCACAGGTTGAGCATATGTTAAATGACAGATTGCTTCAGTTTGTCAATATTGACTTACAAGAGGTCAAGGAAGCCCGAAAACGCTTTGACAAGGCTAGCCTTATTTATGATCAGACTCGTGAAAGGTTTCTGTCACTGAGAAAAGGCACAAAATCTGATGTAGCTACTGCCCTAGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTGTCTAATGTTGAAGCAAAGAAGAGATTTGAGTTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGTTACTTCAAACAGGGGTATGAATTGTTGCATCAAATGGAGCCATATATTAACCAGGCTAGCTTTTTTTTGCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAATTATGAGCAGGCAGCCCTAAATGAAAGAATGCAAGAGTACAAACGACAGATTGATCGGGAGAGTAGGTGGGCTTCAAATGGTTCTAATGGGTCTCCGAATGGAGATGGTATACAAGCCATTGGTAGAAGCTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATCCGACAAGGTTATCTGTCAAAGCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGGTTTTTTGTTCTTGATAGTCGAGGAATGCTGTATTACTACCGTAAACAGTGCAGCAAATCATCTGGGTCTAGTAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCATCATGGTGGAGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTAGATGCTGATCAATCAGATTTGAGGTTTTGCTTCCGGATCATATCACCTACAAAGAACTACACTTTGCAGGCAGAAAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACTGGTGTTATTGCATCATTACTGAGTTCTCAGATTCCTGAAAGGATGTTGCCTGCAAGCCCAATGGGAAGTGGTCATCATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTAGAAGAATGTGTAGCAGATAGAAGTCTTGCTTCAGCGCATCCAGAGCGACCCTCAAGAAGTTTGCAACAGCAGCGATCCTGCACTAAAAGTGAGAAGCCAATTGATGTGTTGCGAAGAGTTTGTGGAAATGATAAATGTGCTGATTGTGGTGCTCCTGAACCTGATTGGGCATCACTAAATCTTGGTGTTCTTGTTTGCATCGAGTGTTCTGGTGTACACCGTAACCTTGGTGTGCACATATCAAAGGTCAGGTCTCTTACATTGGATGTTAAAGTGTGGGAACCTTCTGTCATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCAGTCTGGGAGGAATTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCCCTACAGGCTTAAGCAAGTCTGATAAACCACTGATGTTCTTCATCACCAAACCTTCACAGTCTGATTCTCTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTATGCCGAGAAGCTTTTTGTTCGCAAGCCAAAGGACAATCAATACCGTCTCTTGGTGGCACAACAAATCTGGGAGGCTGTTCATGCTAATGACAAAAAAGCTGTATACCGTTACATTGTTAATTCCGACGTTGATGTTAATGCTGTTTATGAACAAACGTGCAGCAGTTCCTTAACCCTCGCCAAAGTAATGCTATTACAAGAGCAGACTAGCCATGATCACAGCTCTACTGTGGCAGGGAACACATTGGACTGGTCCTCTATGAAAGAAGGCTTGGTCATGGACAATCTAGATGGGTGCACCCTACTTCACCTTGCCTGTGACACTGCAGATATTGGCATGGTGGAGCTCCTCCTACAGTATGGTGCAAATGTTAATGCAACTGATTCAAGAGGTCAAACACCACTACATCGCTGTATTCTCAAAGGCAGATCTACTTTTACAAGATTATTGCTTTCAAGGGGTGCCGATCCCCGAGCTGTGGATGAGCAGGGAAGAACCCCTATTGAGCTTGCTGCAGAGTCAAATGCTGGTGACAGAGAAGTCCATGCTCCGTTGACTGATTCTAATGGATGA 2487 0.4302 MQFAKLDDSPMFRKQIQCMEESAESLRDRSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTRERFLSLRKGTKSDVATALEEELHSARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQASFFLQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERMLPASPMGSGHHRSTSESSSFESSDFDHSAVEECVADRSLASAHPERPSRSLQQQRSCTKSEKPIDVLRRVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVPTGLSKSDKPLMFFITKPSQSDSLSVKEKFIHAKYAEKLFVRKPKDNQYRLLVAQQIWEAVHANDKKAVYRYIVNSDVDVNAVYEQTCSSSLTLAKVMLLQEQTSHDHSSTVAGNTLDWSSMKEGLVMDNLDGCTLLHLACDTADIGMVELLLQYGANVNATDSRGQTPLHRCILKGRSTFTRLLLSRGADPRAVDEQGRTPIELAAESNAGDREVHAPLTDSNG 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02363 828 Pfam PH domain 300 433 IPR001849 -
Cca07g02363 828 CDD PH_ACAP 301 438 - -
Cca07g02363 828 Gene3D Arf GTPase activating protein 487 650 IPR038508 -
Cca07g02363 828 SMART PH_update 299 436 IPR001849 -
Cca07g02363 828 ProSiteProfiles Ankyrin repeat profile. 768 800 IPR002110 GO:0005515
Cca07g02363 828 ProSiteProfiles Ankyrin repeat region circular profile. 735 766 - -
Cca07g02363 828 SMART ANK_2a 735 764 IPR002110 GO:0005515
Cca07g02363 828 SMART ANK_2a 768 797 IPR002110 GO:0005515
Cca07g02363 828 Pfam Ankyrin repeats (many copies) 755 809 IPR002110 GO:0005515
Cca07g02363 828 Gene3D - 651 820 IPR036770 -
Cca07g02363 828 CDD ArfGap 509 638 - -
Cca07g02363 828 MobiDBLite consensus disorder prediction 453 467 - -
Cca07g02363 828 SUPERFAMILY Ankyrin repeat 664 813 IPR036770 -
Cca07g02363 828 Coils Coil 233 253 - -
Cca07g02363 828 ProSiteProfiles Ankyrin repeat profile. 735 767 IPR002110 GO:0005515
Cca07g02363 828 Pfam Putative GTPase activating protein for Arf 509 646 IPR001164 GO:0005096
Cca07g02363 828 MobiDBLite consensus disorder prediction 254 276 - -
Cca07g02363 828 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 826 - -
Cca07g02363 828 SUPERFAMILY BAR/IMD domain-like 6 321 IPR027267 -
Cca07g02363 828 SUPERFAMILY PH domain-like 299 450 - -
Cca07g02363 828 MobiDBLite consensus disorder prediction 444 467 - -
Cca07g02363 828 MobiDBLite consensus disorder prediction 795 828 - -
Cca07g02363 828 Gene3D - 291 444 IPR011993 -
Cca07g02363 828 ProSiteProfiles ARF GTPase-activating proteins domain profile. 506 651 IPR001164 GO:0005096
Cca07g02363 828 MobiDBLite consensus disorder prediction 259 275 - -
Cca07g02363 828 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Cca07g02363 828 PANTHER CENTAURIN/ARF 1 826 IPR045258 GO:0005096
Cca07g02363 828 ProSiteProfiles Ankyrin repeat region circular profile. 768 800 - -
Cca07g02363 828 Pfam BAR domain of APPL family 6 231 - -
Cca07g02363 828 CDD BAR_SFC_plant 14 215 IPR035670 -
Cca07g02363 828 PRINTS HIV Rev interacting protein signature 518 537 IPR001164 GO:0005096
Cca07g02363 828 PRINTS HIV Rev interacting protein signature 537 554 IPR001164 GO:0005096
Cca07g02363 828 PRINTS HIV Rev interacting protein signature 560 581 IPR001164 GO:0005096
Cca07g02363 828 Gene3D Arfaptin homology (AH) domain/BAR domain 4 257 IPR027267 -
Cca07g02363 828 ProSiteProfiles PH domain profile. 298 434 IPR001849 -
Cca07g02363 828 SUPERFAMILY ArfGap/RecO-like zinc finger 506 646 IPR037278 -
Cca07g02363 828 SMART arf_gap_3 506 651 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02363 Cca-Chr7 52241814 52250658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02363 518 645 C2H2 Transcription Factor Family AT4G21160 41.860 1.51e-20 92.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02363 07 52241814 52250658 Cca07g02363 07 52241814 52250658 ECH