Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02358 ATGTTCCCTTCTTCTAATTACACCTCAGGCTCTTACCCTCGTTTCCCAtcttcttcttcttcttcGCAGTACCCTTCTTTTAGTTTCCTCCACCCTGAAAATTCTTCTGCCAGCAACACCTTCCTCCATGATCCACTTGCTGTTACTTACATCCCCTCTCATTACCACACTCCAATCCCTGAAACACTAGCCAATTGGGCAGTTGCAGACTGTGCTGCAATGCTGAACCAAGATCTCAGTGGTGGTGCCCTTTACGGCATCGCCAAGAAACCGGTGAAAAAAACCACCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGTTTGAGGGACCGAAGGGTGAGGCTGTCCATCGAGATCGCCCGCAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGCAACACCCTTGACTGGCTCTTCACCAAGTCCAAGAAGGCAATTAAGGAGCTAACTCTGAGCAAGCAAAGTGCTGATAGCTTCTCTTCATCTTCGGAGGGTGAAGTGGTTTCTATGATCCACCAAGACCTTCGACAACAACAGCGAAGGGTAGATTTGGAAGAAAGGATGTTGAAGGAGCCTGCTTATTGTGTCAAAGCAAAGATGAAGGAGTcaagggaaaaagcaagggcaagggcaagggaaaggacaagtagcaagatgtgcaacataagtggcgaagggaaggtgcaagAGTTGAAGAAAAAGTGCCCTGCAACTGAAAATCATCCTCAAATCCTGAACCAATTAAGGACACCCTCACCCCTTCAGCTTCATTCGCAAGATATGGGTGGTGAAGTGCCAAGAGATGATGAATTCAACGTTATTGAGGAATCCATTGTCATTAAGAGAAAGTTGAAACACGCCTTGATGTCTTCCATTCACCAAAACGTTGTGATCCCTAAGGAAGCAAGTGTAAGCAACAGTGACTACAACTCCTTCCCCAACTTGTGTCCAAATTGGGAAGCTAATAATGCTTCCACTGGACGCCCCGCCTTTTGTGCAATAGCAAGCATGAATCTATCTACAGGGCTTCATATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCAAGCTAA 1098 0.4189 MFPSSNYTSGSYPRFPSSSSSSQYPSFSFLHPENSSASNTFLHDPLAVTYIPSHYHTPIPETLANWAVADCAAMLNQDLSGGALYGIAKKPVKKTTKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTLSKQSADSFSSSSEGEVVSMIHQDLRQQQRRVDLEERMLKEPAYCVKAKMKESREKARARARERTSSKMCNISGEGKVQELKKKCPATENHPQILNQLRTPSPLQLHSQDMGGEVPRDDEFNVIEESIVIKRKLKHALMSSIHQNVVIPKEASVSNSDYNSFPNLCPNWEANNASTGRPAFCAIASMNLSTGLHIFGKSWEECTNPHPS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02358 365 ProSiteProfiles R domain profile. 207 224 IPR017888 -
Cca07g02358 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 364 IPR005333 GO:0003700
Cca07g02358 365 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 18 364 - -
Cca07g02358 365 ProSiteProfiles TCP domain profile. 97 155 IPR017887 -
Cca07g02358 365 Pfam TCP family transcription factor 95 226 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02358 Cca-Chr7 52170149 52172211 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02358 52 328 TCP Transcription Factor Family AT1G67260 34.797 1.74e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca07g02358 TCP 5.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02358 - - gmx:100786452 511.146