Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02357 ATGTCTGAAATGGTTTCTGCTCTTGCTCAAGTTATGGGAACCACCAATCGGAACCCACACATGCCACAATCAACTTATTTTCCTCTCTCAACTTCAGTGGTCAATGATCAGCCTCAACCTTACCCATCTCATCCTCCTCTAGATCAAAAAGAAGTGACAAAGAAACCACACTACAGAGGAGTGAGGCAGAGACCATGGGGCAAATGGGCAGCAGAAATACGTGATCCCAAAAAAGCAGCCAGAGTGTGGCTGGGAACCTTTGAAACAGCTGAGGATGCAGCCCTTGCATATGACAAAGCAGCACTCAAGTTCAAAGGCACAAAAGCCAAACTTAATTTCCCTGAAAGGGTTCATCAAGATGCAACTTTTCTTCAACAAGCTCCATCAAACAAAAACATCATTCCCTTCCAAGCAACTGGCTCTGTTTCTTCTCTTGATGCTGTAACCCCTCACCCATTGTCCACACAACATGACCACCAAGTTTTCCCTAATCTCTTCCAATATGCACGGATTCTTTCAAGTGATGATTCACAGTTCCCTTATTACACATCACATCTTTTCAATCACCAACAACAAGAACAACCACCTTTGAGTTCTCAATTCTCTACCACTTTATCATCCTCCTCATCTCCCTCATCCTACTTCTACAACCAGCAACAACAATATGATGAACAAGGACATGATCACTCAGGCCAGTAG 699 0.4363 MSEMVSALAQVMGTTNRNPHMPQSTYFPLSTSVVNDQPQPYPSHPPLDQKEVTKKPHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDKAALKFKGTKAKLNFPERVHQDATFLQQAPSNKNIIPFQATGSVSSLDAVTPHPLSTQHDHQVFPNLFQYARILSSDDSQFPYYTSHLFNHQQQEQPPLSSQFSTTLSSSSSPSSYFYNQQQQYDEQGHDHSGQ 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02357 232 PANTHER DNA-BINDING DOMAIN 29 225 IPR044808 GO:0003700|GO:0009873
Cca07g02357 232 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Cca07g02357 232 MobiDBLite consensus disorder prediction 189 232 - -
Cca07g02357 232 CDD AP2 56 115 IPR001471 GO:0003700|GO:0006355
Cca07g02357 232 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Cca07g02357 232 MobiDBLite consensus disorder prediction 35 60 - -
Cca07g02357 232 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Cca07g02357 232 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Cca07g02357 232 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Cca07g02357 232 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 29 225 - -
Cca07g02357 232 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Cca07g02357 232 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02357 Cca-Chr7 52158938 52162730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02357 4 187 AP2-EREBP Transcription Factor Family AT5G13330 48.691 1.31e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g02357 AP2 5.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02357 - - gmx:100796624 343.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02357 07 52158938 52162730 Cca08g00236 08 3272304 3274236 ECH
Cca07g02357 07 52158938 52162730 Cca09g02708 09 52755045 52756869 ECH
Cca07g02357 07 52158938 52162730 Cca07g02357 07 52158938 52162730 ECH
Cca07g02357 07 52158938 52162730 Cca03g00273 03 3997562 4000065 ECH
Cca07g02357 07 52158938 52162730 Cca09g02350 09 48796705 48800011 ECH
Cca07g02357 07 52158938 52162730 Cca07g00740 07 11436554 11439395 ECH
Cca06g00332 06 9384301 9385746 Cca07g02357 07 52158938 52162730 ECH