Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02352 ATGTTCCCTTCTTCTAATTACACCTCAGGCTCTTACCCTCGTTTCCCAtcttcttcttcttcttcGCAGTACCCTTCTTTTAGTTTCCTCCACCCTGAAAATTCTTCTGCCAGCAACACCTTCCTCCATGATCCACTTGCTGTTACTTACATCCCCTCTCATTACCACACTCCAATCCCTGAAACACTAGCCAATTGGGCAGTTGCAGACTGTGCTGCAATGCTGAACCAAGATCTCAGTGGTGGTGCCCTTTACGGCATCGCCAAGAAACCGGTGAAAAAAACCACCAAGAAAGACAGGCACAGCAAGATTCACACTTCTCAGGGTTTGAGGGACCGAAGGGTGAGGCTGTCCATCGAGATCGCCCGCAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGACAAAGCCAGCAACACCCTTGACTGGCTCTTCACCAAGTCCAAGAAGGCAATTAAGGAGCTAACTCTGAGCAAGCAAAGTGCTGATAGCTTCTCTTCATCTTCGGAGGGTGAAGTGGTTTCTATGATCCACCAAGACCTTCGACAACAACAGCGAAGGGTAGATTTGGAAGAAAGGATGTTGAAGGAGCCTGCTTATTGTGTCAAAGCAAAGATGAAGGAGTcaagggaaaaagcaagggcaagggcaagggaaaggacaagtagcaagatgtgcaacataagtggcgaagggaaggtgcaagAGTTGAAGAAAAAGTGCCCTGCAACTGAAAATCATCCTCAAATCCTGAACCAATTAAGGACACCCTCACCCCTTCAGCTTCATTCGCAAGATATGGGTGGTGAAGTGCCAAGAGATGATGAATTCAACGTTATTGAGGAATCCATTGTCATTAAGAGAAAGTTGAAACACGCCTTGATGTCTTCCATTCACCAAAACGTTGTGATCCCTAAGGAAGCAAGTGTAAGCAACAGTGACTACAACTCCTTCCCCAACTTGTGTCCAAATTGGGAAGCTAATAATGCTTCCACTGGACGCCCCGCCTTTTGTGCAATAGCAAGCATGAATCTATCTACAGGGCTTCATATTTTTGGAAAATCTTGGGAGGAGTGCACCAATCCTCATCCAAGCTAA 1098 0.4189 MFPSSNYTSGSYPRFPSSSSSSQYPSFSFLHPENSSASNTFLHDPLAVTYIPSHYHTPIPETLANWAVADCAAMLNQDLSGGALYGIAKKPVKKTTKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTLSKQSADSFSSSSEGEVVSMIHQDLRQQQRRVDLEERMLKEPAYCVKAKMKESREKARARARERTSSKMCNISGEGKVQELKKKCPATENHPQILNQLRTPSPLQLHSQDMGGEVPRDDEFNVIEESIVIKRKLKHALMSSIHQNVVIPKEASVSNSDYNSFPNLCPNWEANNASTGRPAFCAIASMNLSTGLHIFGKSWEECTNPHPS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02352 365 ProSiteProfiles R domain profile. 207 224 IPR017888 -
Cca07g02352 365 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 364 IPR005333 GO:0003700
Cca07g02352 365 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 18 364 - -
Cca07g02352 365 ProSiteProfiles TCP domain profile. 97 155 IPR017887 -
Cca07g02352 365 Pfam TCP family transcription factor 95 226 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02352 Cca-Chr7 52102017 52103221 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02352 52 328 TCP Transcription Factor Family AT1G67260 34.797 1.74e-33 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca07g02352 TCP 5.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02352 - - gmx:100786452 511.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02352 07 52102017 52103221 Cca03g00731 03 14452771 14454446 ECH
Cca07g02352 07 52102017 52103221 Cca11g02102 11 46569339 46570765 ECH
Cca07g02352 07 52102017 52103221 Cca07g02352 07 52102017 52103221 ECH
Cca07g02352 07 52102017 52103221 Cca09g00438 09 10648652 10650630 ECH