Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02343 ATGGCTTCAACCATCCTTTCCCCAAATGCTTCTCCTGTTGCAGTGCCTCCAGCACTTGGTGGTGTTTTATCATCACCACCTCCTTCTTCATCTTCTCCAACAAATTCTTCCACTCCACCATCACCTCCCAATTCTCCTCAGCCTAATCAAACATCCAATTCCCCTGCTCCATCATCTCCACCTCCTTCTCCTCCTCAGGCAGTGCCTGTAACCCCTCCCCCTTCCCCATCACTCTCTcctccaccaccatccactacaccaccaccatctttgccccctccttcaccacctgattctccaccaccattgccaccagcatctccaactccaccagtttcaacgtctcccccctcaccaccagccatcactgcccctcctccaGCTGAGACACCACCTTCCACTCCGAATTTGTCTCCACCAGCCGGTTCCCCTCCTCCTCAATTGCCTCCCACAACAATTCCACCACCCTCTAGACCCATTTCGCAGTCTCCTCCTCCAGCCAATGTTCCAAGGCCACCATCCACCACTCCCCCTCCACAGAAGGAGAATCCACCCAAAAGTAGTCCTTCACCTCCTTCACATGCATCCCCTCCATCAGTTTCTCAATCTCCTCCTAAACCTCCTTCCTCTGATGTTCCCCCTCCATCCACATTGCCATTAACTCCTCCTTCATTCCCTTCAACTCCGAATTCTTTACCTGATCCACCAACTAATGAAACCACGGCAGGGGGTCCAACCGTGTCACTGCCCTCTCTTCCAACTGAGAAACCTACTGCTAGACCAACTAATGATGGTACTAACAATATGGCTACAAACAACGCACCTTCACATTCAGGAGGGTTGAGTACTGGAGGATCTGTGGCTATTGGAATTGTAGTTGGTTTTGTTATCCTTAGTCTTCTTGTTATGGCTGTGTGGTTTGTACAGAAGAAAACGAAGAAGGATAAAGGATCTAGAGGTGGTTATGCTGCTCCTTCTCCATTTACCTCATCCCATAATTCAGGTACCTTATTCTTGAGGCCACAGTCTCCTGCCAACTTTGTAGGTAGCGGATCTGGTAGTGATTTTGTGTATTCGCCGTCAGAGCCGGGTGGTGTAAGTAGTTCAAGATCATGGTTCACATATGAAGAACTTATCCAAGCTACAGATGGGTTTTCAGCACAAAATTTGTTGGGAGAAGGTGGATTTGGTTGTGTCTATAAAGGTTTGCTCATAGATGGAAGAGAAGTTGCTGTGAAACAGCTCAAAGTTGGTGGTGGACAAGGGGAACGTGAATTCAGGGCAGAAGTGGAGATTATTAGCCGTGTACACCATCGTCATCTAGTTTCGTTGGTTGGTTACTGTATATCTGAGCATCAGAGATTGCTTGTATATGACTATGTTCCCAACAATACTCTTCATTACCATCTCCATGGTGAAAATAGACCAGTTCTGGATTGGTCTACTAGAGCCAAGGTTGCTGCTGGTGCAGCTCGTGGAATAGCTTACCTGCATGAAGACTGCCATCCACGCATTATTCATCGAGATATCAAGTCATCAAACATCTTGCTTGATCTTAACTATGAAGCTCGAGTTTCGGACTTTGGGCTTGCAAAATTGGCATTAGATTCAAATACACATGTAACTACACGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAACTGACTGAAAAGTCTGATGTATATTCCTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCATCTCAACCAATCGGTGATGAGAGCTTGGTTGAATGGGCCCGGCCTCTGTTGACGGAAGCACTTGACAATGAAGATTTTGAAATTTTGGTGGATCCAAGACTGGGAAAGAACTATGATAGAAATGAAATGTTTCGGATGATCGAAGCTGCTGCAGCCTGTGTACGCCACTCCTCGGTGAAGAGGCCACGTATGAGTCAGGTGGTGAGAGCTTTAGATTCCTTAGATGAGTTTACGGATCTCAACAATGGCATGAAACCAGGGCAGAGTTCGGTTTTCGATTCTGCACAGCAATCTGCACAAATCAGAATGTTTAGAAGGATGGCTTTTGGGAGCCAAGATAGTTCATCTTTCTTCAATGAGTCTCAGAGTAGCTGGAGGAGTAGAGACAATGACTCAACAACTAAATTCTCACAGAATAAATCAGGGTTCTCCTCAAATCTCTCTTCTTTCCTCTTTATTTCTGAATCCACTCTTCAATTTTTTAATATTCAAACACAGTTGCTCCACACCTCCATCGCCATCATTCGATATTCAAACAGAGTTGCAGCATTAATCAGCAATCACAACCACCAGCTGCTGGGAGGACATTATTTGGAAATAAATCATGGGTCGGCCGAAAGAGGAGGTTTTTCAAGAATTAAAGCACATTTAGAGAAAACACCAGGGAAAGGCATTTCTATATGCTCGGTTTATTGTGGCAACGGAGGAACGCAAAACATCATTGCTTCCTCTTCAACGGCTCCACAAGGAGGAGCATTAAATCCATTACAAGTATATATAATTTTTAATGAAGCAATGACAAAAACAACGCATAGAGGTTTTGTAGCAGGTGAGCGTGGAGTGAGTGGAAGCAGCCATGTTCTCGAACAGTTAAATGAGTTGGTATGCGATCTAACAAGAGAGGAAGAAGACATTAAGGGTCAATTACAATGGTTGGAGTCACGGGGCAAGAAGCCAAAGAGTCAAGTTGACCATTGGTTAAATAAACTACAGGACCTCAAAACAAGAGCTGATCATAGCATGCAGCAGTTAGGATCGATGGAAATACAGGATTTGATTATAGAAAAGGCATGTCATATGAGAAAGAAGCCTCTAGTGGTGTCAAATGAATTTGTTGGCGAGGATTTTGAGGAAAATGTTGACAAGATATGGAAGCTTCTGGGGGATGATGAAGTTTTGATTATTGGCATACACGGAATGGGGGGAGTGGGGAAAACATTCCTAGCAACTTATATGGAGAATGAGATCAAAAGAAAGAAAAGTTTCAAGCATGTCTTCTGGGTCACTGTTTCCCATGATTTCACCATTTTCAAATTGCAACACCGCATTGCAGAAACAATGGGGTTAAAGCTTTACAGAGATGATGAGAGAAGTAGAGCAACAATTTTGGCATCTGAGTTGGAGAAAATAGAAAAATCAGTACTTATTTTGGATGATGTTTGGAAATATATTGATCTAGAGAAGGTGGGAATTCCTCTTAAAATGAATGGCATTAAATTGATTATCACAAGTCGTTTGAAACATGTGTGCCAACAAATGGATTGTTTGCAAAAAGATATGATAACAGTGTATCCTTTAGATGTGATTGATGAGAAAGATTTAGATTGGAAGTTATTTTTGCTAAAATTAGGACACCATGGAATACCTGCAACGCTTTCCCCTAAAGTAGAAGAGGTTGCAAGATCCGTTGTAAAAAAGTGCGATGGTTTACCAGTTGCAATCAGTGTGATGGCTAGAAGCATGAAGGAGCAAGATGACATTCATTGGTGGAAGCATGCATTGAATAAAGTTGAAAATTTTGAAATGGGAGAAGAGGTGAAAACCGTACTAAAGCGTAGCTATGATAATTTAAATGACAAGGACTTGCAAAAATGCTTCTTATACTGTGCACTATTACCTTATGATAATAAAGGGAATTGGGTTCAAAAGCTTGTTGAGAGGGGACTGTTGAATGGAAAGAGGAGTTTCGAAGAAATGATTTATGAGGGGAATGTCATGGTAGATAAACTCATAAACCATTCTTTGTTGTTGTGGGATGGGTGGG 3805 0.4113 MASTILSPNASPVAVPPALGGVLSSPPPSSSSPTNSSTPPSPPNSPQPNQTSNSPAPSSPPPSPPQAVPVTPPPSPSLSPPPPSTTPPPSLPPPSPPDSPPPLPPASPTPPVSTSPPSPPAITAPPPAETPPSTPNLSPPAGSPPPQLPPTTIPPPSRPISQSPPPANVPRPPSTTPPPQKENPPKSSPSPPSHASPPSVSQSPPKPPSSDVPPPSTLPLTPPSFPSTPNSLPDPPTNETTAGGPTVSLPSLPTEKPTARPTNDGTNNMATNNAPSHSGGLSTGGSVAIGIVVGFVILSLLVMAVWFVQKKTKKDKGSRGGYAAPSPFTSSHNSGTLFLRPQSPANFVGSGSGSDFVYSPSEPGGVSSSRSWFTYEELIQATDGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHGENRPVLDWSTRAKVAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDLNYEARVSDFGLAKLALDSNTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEWARPLLTEALDNEDFEILVDPRLGKNYDRNEMFRMIEAAAACVRHSSVKRPRMSQVVRALDSLDEFTDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFFNESQSSWRSRDNDSTTKFSQNKSGFSSNLSSFLFISESTLQFFNIQTQLLHTSIAIIRYSNRVAALISNHNHQLLGGHYLEINHGSAERGGFSRIKAHLEKTPGKGISICSVYCGNGGTQNIIASSSTAPQGGALNPLQVYIIFNEAMTKTTHRGFVAGERGVSGSSHVLEQLNELVCDLTREEEDIKGQLQWLESRGKKPKSQVDHWLNKLQDLKTRADHSMQQLGSMEIQDLIIEKACHMRKKPLVVSNEFVGEDFEENVDKIWKLLGDDEVLIIGIHGMGGVGKTFLATYMENEIKRKKSFKHVFWVTVSHDFTIFKLQHRIAETMGLKLYRDDERSRATILASELEKIEKSVLILDDVWKYIDLEKVGIPLKMNGIKLIITSRLKHVCQQMDCLQKDMITVYPLDVIDEKDLDWKLFLLKLGHHGIPATLSPKVEEVARSVVKKCDGLPVAISVMARSMKEQDDIHWWKHALNKVENFEMGEEVKTVLKRSYDNLNDKDLQKCFLYCALLPYDNKGNWVQKLVERGLLNGKRSFEEMIYEGNVMVDKLINHSLLLWDGW 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02343 1268 PRINTS Disease resistance protein signature 1154 1168 - -
Cca07g02343 1268 PRINTS Disease resistance protein signature 981 996 - -
Cca07g02343 1268 PRINTS Disease resistance protein signature 1054 1068 - -
Cca07g02343 1268 Pfam NB-ARC domain 964 1202 IPR002182 GO:0043531
Cca07g02343 1268 Gene3D Phosphorylase Kinase; domain 1 362 460 - -
Cca07g02343 1268 Pfam Protein tyrosine and serine/threonine kinase 388 658 IPR001245 GO:0004672|GO:0006468
Cca07g02343 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 949 1216 IPR027417 -
Cca07g02343 1268 MobiDBLite consensus disorder prediction 701 730 - -
Cca07g02343 1268 ProSiteProfiles Protein kinase domain profile. 385 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02343 1268 Gene3D - 939 1108 IPR027417 -
Cca07g02343 1268 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 99 708 - -
Cca07g02343 1268 MobiDBLite consensus disorder prediction 32 233 - -
Cca07g02343 1268 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK8 99 708 - -
Cca07g02343 1268 Gene3D Transferase(Phosphotransferase) domain 1 461 677 - -
Cca07g02343 1268 SMART serkin_6 385 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02343 1268 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Cca07g02343 1268 MobiDBLite consensus disorder prediction 234 280 - -
Cca07g02343 1268 SUPERFAMILY Protein kinase-like (PK-like) 363 658 IPR011009 -
Cca07g02343 1268 MobiDBLite consensus disorder prediction 1 280 - -
Cca07g02343 1268 ProSitePatterns Protein kinases ATP-binding region signature. 391 413 IPR017441 GO:0005524
Cca07g02343 1268 Gene3D - 1119 1205 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02343 Cca-Chr7 51976760 52001492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02343 287 600 Trihelix Transcription Factor Family AT1G26150 68.254 1.05e-142 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Cca07g02343 PK_Tyr_Ser-Thr 8.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02343 - - gmx:100784873 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02343 07 51976760 52001492 Cca07g02343 07 51976760 52001492 ECH