Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02323 ATGTTGGAAGGAGGAGAACCCGCTGCCACGTGGGCGCCGCGCACGTGCGACACGTGCCGCGCAGCCGCCTCCACCGTCTTCTGCCGCGCCCACTCCTTCTTCCTCTGCGCCGCATGCGACGCGCGCCTCCACGCCTCGCCGTCGTGGCACGAGCGCGTGTGGGTGTGCGAGGCGTGCGAGCGAGCTCCGGCGGCGTTCCTCTGCAAGGCCGACGCCGCCTCCCTGTGCTCCTCCTGCGACGCCGACATCCACTCCGCCAACCCCCTCGCCGGCCGCCACCACCGCGTCCCCATTCTCCCCATCTCCTCCTCCTCCTCCGCCGCCGCCGCCCCCCaccaccacgacgacgacgacgatgctgacgccgacgccgacgacgacgacgaAACAGCTTCCTGGCTCTTGCTGAACCCTCTGAAGAGCGCCACTGTCCCTAACAACAACGACAGTAACAATAATAATGGGTTCTTGTACGGTGGTGAAGTTGATGAGTATTTGGACCTTGTTGATAATTGTAACTCTTGTGGTGACAATAGTAACCACTTCACTGCTGCTACTACCACCACCGATGATTATGCTCAGCATCAACATTTTGATGGTGTTTCTCATCACAAGAGTTATGCTGGGGATAGTGTCGTTCCGGTTCAGCAGCATCATCATTTTCAGCTTAGTTTGGAGTTTGacaacaacaacaacaacaaAGCTTCCTTCGGCTTCAATGCTTCTGTTAGTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCTGAATCAACAATGATGGATGTCTCAATTGGCCATTCAAGACCACCCAAAGGCACAATTGACCTATTTTCTGGACCTTCAATTCAGATGCCTTCCCACCTTACTCCAATGGACAGGGAAGCCAGAGTCCTAAGGTATAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACTATAAGGTATGCCTCAAGGAAGGCTTATGCAGAGACTAGACCCCGTATAAAAGGTCGATTCGCCAAGAGAACTGATGTAGAAGCTGAAGTGGATCAGATGTTCTCCACAACACTAATTACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1098 0.4954 MLEGGEPAATWAPRTCDTCRAAASTVFCRAHSFFLCAACDARLHASPSWHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLAGRHHRVPILPISSSSSAAAAPHHHDDDDDADADADDDDETASWLLLNPLKSATVPNNNDSNNNNGFLYGGEVDEYLDLVDNCNSCGDNSNHFTAATTTTDDYAQHQHFDGVSHHKSYAGDSVVPVQQHHHFQLSLEFDNNNNNKASFGFNASVSQSVSVSSMDVGVVPESTMMDVSIGHSRPPKGTIDLFSGPSIQMPSHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLITEVGYGIVPSF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02323 365 SMART bboxneu5 11 48 IPR000315 GO:0008270
Cca07g02323 365 SMART bboxneu5 51 98 IPR000315 GO:0008270
Cca07g02323 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 11 365 - -
Cca07g02323 365 ProSiteProfiles Zinc finger B-box type profile. 51 98 IPR000315 GO:0008270
Cca07g02323 365 CDD Bbox1_BBX-like 55 98 - -
Cca07g02323 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 11 365 IPR045281 GO:0009909
Cca07g02323 365 Pfam CCT motif 296 338 IPR010402 GO:0005515
Cca07g02323 365 ProSiteProfiles Zinc finger B-box type profile. 16 55 IPR000315 GO:0008270
Cca07g02323 365 MobiDBLite consensus disorder prediction 105 127 - -
Cca07g02323 365 CDD Bbox1_BBX-like 16 55 - -
Cca07g02323 365 Pfam B-box zinc finger 53 98 IPR000315 GO:0008270
Cca07g02323 365 ProSiteProfiles CCT domain profile. 296 338 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02323 Cca-Chr7 51776086 51778713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02323 1 365 C2C2-CO-like Transcription Factor Family AT3G02380 53.247 3.21e-124 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Cca07g02323 zf-B_box 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02323 - - gmx:100301886 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02323 07 51776086 51778713 Cca07g02323 07 51776086 51778713 ECH
Cca09g00378 09 8974946 8976784 Cca07g02323 07 51776086 51778713 PCT