Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02314 ATGACGATTGGTAGTTTAGCACCGAGGGCAGAGAAGAAGAGATCAAGGAAGAACAAGGCAGTTGTTAATGAGAATGCACCCTTGTTGCCGAAAAGTCTTGTTCAGGAGAGTGATTCTGGGTTTGATGATTTCAATGGAGCTTCATTTTCTGGGGCTGTTTTCAACTTGTCCACCACAATTATCGGTGCCGGAATCATGGCCTTGCCTGCAACCTTGAAGCAGTTGGGGATGGTGCCTGGTCTTGCTGCCATCATCATCATGGCCTTGTTGACAGAGAAGTCAATTGAGCTTTTGATTAGGTTTACCCGGGCAGGGAAGTCTGTTTCTTATGCTGGACTTATGGGGGATTCCTTTGGGAAGTATGGAAAAGCTCTGGTGCAGATATGTGTTATAATCAATAACATTGGTGTGCTGATTGTTTACATGATTATAATTGGTGATGTGCTCTCCGGAACATCTTCAGGTGGAGATCATCACTATGGTATCCTCGAAGGATGGTTTGGTGTGCACTGGTGGACTGGACGGACGTTTGTTGTCCTTTTTACAACACTTGCGATATTTGCACCGCTGTCAAGCTTTAAGCGAATTGATTCATTGAGATTCACATCTGCCCTTTCAGTTGCACTAGCAGTTGTTTTTCTAGTCATTGCTGTGGGAATTGCAATTGTGAAGATAATAAGTGGAGGTGTTGCGATGCCCAGACTCTTCCCGGTTGCTACTGATGTGGCATCATTCTTTAAACTATTCACTGTAGTTCCTGTCTTTGTGACTGCCTATATCTGCCACTACAATGTTCACAGCATTGACAATGAACTTGAGGACTCCTCACAGATGCGAGGGGTTGTACAAACCGCCCTTGCTCTGTGCTCTTCAGTGTATGTAATGATAAGCTTCTTTGGGTTCCTCCTATTTGGTGAAGGAACTCTTGATGATGTGCTGGCCAATTTCGATACCAATCTTGGAATTCCTTTCGGTTCTGTGCTCAATGACGCTGTTCGAATAAGCTATGCTGCACATCTCATGCTTGTATTTCCAGTTGTCTTCTATCCTTTGCGGCTCAATATAGATGGTCTCTTCTTCTCTTCATCAAGGCCTCTGGTTTTGGACAACTTCAGATTTGCATCACTCACTGCTGCTCTAATTGGTATTATCTTCCTTGGAGCAAATTTCATACCTAGCATTTGGGATGCTTTCCAGTTCACCGGAGCAACTGCTGCAGTCTGTATAGGATTCATTTTTCCAGCTGCCATCACTCTTAAGGACCGTTACGACATTGCAACCAAATCAGACAGGATTTTGTCTATCGCTATGATAGTCTTGGCAGTCTTCTCAAATGTTGTGGCTATTTACAGTGATGCCTATGCCTTGATCAAACAGAACAAAACTTCACGAGAGTGA 1398 0.4392 MTIGSLAPRAEKKRSRKNKAVVNENAPLLPKSLVQESDSGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLKQLGMVPGLAAIIIMALLTEKSIELLIRFTRAGKSVSYAGLMGDSFGKYGKALVQICVIINNIGVLIVYMIIIGDVLSGTSSGGDHHYGILEGWFGVHWWTGRTFVVLFTTLAIFAPLSSFKRIDSLRFTSALSVALAVVFLVIAVGIAIVKIISGGVAMPRLFPVATDVASFFKLFTVVPVFVTAYICHYNVHSIDNELEDSSQMRGVVQTALALCSSVYVMISFFGFLLFGEGTLDDVLANFDTNLGIPFGSVLNDAVRISYAAHLMLVFPVVFYPLRLNIDGLFFSSSRPLVLDNFRFASLTAALIGIIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLKDRYDIATKSDRILSIAMIVLAVFSNVVAIYSDAYALIKQNKTSRE 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02314 465 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 8 460 - -
Cca07g02314 465 Pfam Transmembrane amino acid transporter protein 47 451 IPR013057 -
Cca07g02314 465 PANTHER AMINO ACID TRANSPORTER 8 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02314 Cca-Chr7 51654897 51658558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02314 3 465 Amino Acid or Auxin Permease AAAP Family AT3G30390 68.251 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02314 K14207 - gmx:100796345 822.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02314 07 51654897 51658558 Cca07g02314 07 51654897 51658558 ECH
Cca09g00364 09 8684022 8688715 Cca07g02314 07 51654897 51658558 PCT