Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02303 ATGGTTAATCAAGCTGATTTAGTTATCATTTGTGTCTCTGTTGGGGTGGCCCTTGGAGTTTTGATTGCTTGCCTCATATATTTTGGCATAAGGTGGTATAAGAAGCGAAGTCATCTTGGTCGATCTGCGAATGAACCTAGTTTAACGACTCTCCCTATACGAACAAATGGATTAGGAACGAGCATTGACTTCAGTGCTTCTCTCACCAGTTCCATAGCCACTTCAAGGTCACCAAATCCTCAAAAAAGTTTGCATTCAACTTGGTGGAATCATCAGAACACAGATGGGTTTGCTTCAACATCAGGCATTCTAAAGTACTCATACAAAGAAATTCAAAAGGCCACACATGACTTCACAAATACATTGGGACAAGGATCATTTGGCACAGTTTATAAAGCCACAATGCCTACAGGAGAGGTGGTAGCTGTCAAGGTGCTTGCTCCCAATTCCAAACAAGGGGAGAAAGAATTTCAAACAGAGGTGCTTCTGCTAGGAAGACTGCATCATCGAAATCTTGTAAATTTGTTAGGATACTGCATAGATAAAGGACAGCATATGCTGGTTTACCAGTTCATGAGTAATGGAAGTTTAGAAAACCTTCTATATGATGAAGAAAAGAAATTGAGTTGGGGTGAAAGGCTGCAAATTGCTGTTGATATTTCACACGGAATAGAATATCTTCATGAAGGGGCCGTCCCACCCGTCGTGCACCGTGATTTGAAATCAGCTAATATATTGCTAGATCAGTCAATGAGAGCTAAGGTTTCTGATTTTGGGCTCTCAAAGGAAGAGATCTTTGATGGCCGTAATTCTAGCCTTAAAGGTACATATGGCTACATGGATCCAGCATACATTTCCTCGAGCAACTTCACAATGAAGAGTGACATTTATAGTTTTGGTATAATAATTTTTGAGCTTATCACTGCAATCCACCCACATCAAAATTTGATGGAATATATCAATCTTGCTGCAATGGATTATGATGGTGTAGATGGGATTCTTGACAAGCAACTTGTGGGAAAATGCGATCTTGAAGAAGTGAGACAGCTTGCTAAAATTGCACACAAATGTTTGCACAAATCACCCAAGAAACGCCCCTCCATTGGTGAGGTTTCACAGGGTATATTGAGGATTAATCAAAGGCGCCTCATGAAAGAGGACACCATGTCATTTGCAAGTGACAACATCTCTCGAACTGTGAGTCAAATAGAGGATCAACAGGTTGAATTGAGTAAAATAACCACCATGAACCACGGAGAAATGGGGTGA 1269 0.4066 MVNQADLVIICVSVGVALGVLIACLIYFGIRWYKKRSHLGRSANEPSLTTLPIRTNGLGTSIDFSASLTSSIATSRSPNPQKSLHSTWWNHQNTDGFASTSGILKYSYKEIQKATHDFTNTLGQGSFGTVYKATMPTGEVVAVKVLAPNSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCIDKGQHMLVYQFMSNGSLENLLYDEEKKLSWGERLQIAVDISHGIEYLHEGAVPPVVHRDLKSANILLDQSMRAKVSDFGLSKEEIFDGRNSSLKGTYGYMDPAYISSSNFTMKSDIYSFGIIIFELITAIHPHQNLMEYINLAAMDYDGVDGILDKQLVGKCDLEEVRQLAKIAHKCLHKSPKKRPSIGEVSQGILRINQRRLMKEDTMSFASDNISRTVSQIEDQQVELSKITTMNHGEMG 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02303 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Cca07g02303 422 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Cca07g02303 422 SUPERFAMILY Protein kinase-like (PK-like) 85 372 IPR011009 -
Cca07g02303 422 Gene3D Transferase(Phosphotransferase) domain 1 192 401 - -
Cca07g02303 422 CDD STKc_IRAK 122 378 - -
Cca07g02303 422 Gene3D Phosphorylase Kinase; domain 1 81 191 - -
Cca07g02303 422 ProSiteProfiles Protein kinase domain profile. 116 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02303 422 Pfam Protein tyrosine and serine/threonine kinase 118 372 IPR001245 GO:0004672|GO:0006468
Cca07g02303 422 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 2 9 418 - -
Cca07g02303 422 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02303 422 PANTHER OS01G0750732 PROTEIN 9 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02303 Cca-Chr7 51562211 51566230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02303 62 371 Receptor kinase-like Gene Family AT3G19300 39.688 1.61e-71 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Cca07g02303 PK_Tyr_Ser-Thr 1.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02303 - - gmx:100794239 763.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02303 07 51562211 51566230 Cca07g02303 07 51562211 51566230 ECH
Cca07g02303 07 51562211 51566230 Cca09g00351 09 8357506 8362568 PCT