Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02289 ATGGGTTCAGTTTGTTGCTGTTTGAATGTTGATAATTTTGAAGATTACATGAATCCAAATAGTCCTGTATATAGGAACTGTGTGTGTCTTAGTTGCTTCGTACAGAACTTTTTGACTGTGTATGCATCAATATTCCGTAGAGGGGAAGTGCATGCGATTCCTTCATCTATACAGGGCGCAGCATCTATGACTTCTACAGCTTCACTTGATAATTCTCTATCTGACATGTACCGTTCTCCTCCAAGGCCCTTGCCTTATGATGCAGACCCCAGGTTTTTCCGTTCACAGCGTGATGGACTAGTGTCAAGACGTGAGAAAGGTTCAAGTCATTTGAATGAAGAGTCGGAACCTCTAAGAGGTGATTTAGATGCTGATTTAGAATCTTTAAATTCGGGTGGTAAATGGAATGATACCAGTGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCGGTAAGACTTTCATCAGCAAAACTTACGAATGGACCTGGGCTTGTCTATtcatcatcatcatcatcGGAAGACGAGGATGTTTGCCCGACCTGTCTTGAAGAGTACACTGAAGAGAATCCAAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAGTGGATGGAAAGAAGTGACAACTGTCCTGTTTGTGGGAAGGTGATGGTATTCGATGAAACGACTTAA 690 0.4043 MGSVCCCLNVDNFEDYMNPNSPVYRNCVCLSCFVQNFLTVYASIFRRGEVHAIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRFFRSQRDGLVSRREKGSSHLNEESEPLRGDLDADLESLNSGGKWNDTSEDGSKEYRSKSSVRLSSAKLTNGPGLVYSSSSSSEDEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMVFDETT 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02289 229 SMART ring_2 179 219 IPR001841 -
Cca07g02289 229 SUPERFAMILY RING/U-box 172 226 - -
Cca07g02289 229 Pfam RING-H2 zinc finger domain 176 219 IPR024766 GO:0008270
Cca07g02289 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 226 IPR013083 -
Cca07g02289 229 ProSiteProfiles Zinc finger RING-type profile. 179 219 IPR001841 -
Cca07g02289 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 228 - -
Cca07g02289 229 MobiDBLite consensus disorder prediction 101 123 - -
Cca07g02289 229 MobiDBLite consensus disorder prediction 101 154 - -
Cca07g02289 229 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 228 - -
Cca07g02289 229 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02289 Cca-Chr7 51401805 51408344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02289 1 227 C3H Transcription Factor Family AT5G38895 58.079 3.91e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02289 - - gmx:100788192 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02289 07 51401805 51408344 Cca07g02289 07 51401805 51408344 ECH