Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02288 ATGTTTCTGAAATGTTTTGGCGACAGAAATTCAAGTGGTGCTGGTAGAGGGTATCCCACAGTAATCGAAGAGCTGTGCCGTCCATTTTCTTGGGCTGAAATTAAGAAAgcaaccaacaactttgatgaaaagagaataattggagatggagaatttagtaaagcatataaaggttatcttaaacgcaatgatggtactgattatgcagttgcagtgaagcgatttaaagtggaacgccctgatggatggggagagttcatgactgaggtagagttgcactgccagcttcatcaccctcatataatctctcttataggattctgcatccacaaaaaagaaaagattatcgtgttcgagtacatgcccaatggatctctacatggacacctgcaaggtggggaactgtcatggaagaaaaggctagagatttgcataggagcagcacgtggactacactaccttcaagcaggagctaagcgtaccatcattcaccgtcacatcaaacctagctacattcttttggaccacaacatgcacccaaaactcgtaggtttcggccttAGCATACAAGGAGCACGTTTTATGTCAAAGCCTAAACCAATTCAATTAGACATTATTAGAGGTACTCTTGTCTACGCAGCGCCGGAGTCTTACCAGAAAGGTATCGTGACAGATAAAAGTGATGTTTACTCGTTTGGTATAGTTCTACTAGAAGTTGTGTGGGGAAGAGGAATTTACGACATTGTAAGAGAAGGAGAAGCAAGAGATTTTCTGGAGAAGCCTGTTGAGGAGAAAATTGATCCAAATATGATTGGTAAGATTGCACCGGAGTGTTGGCAAGTGTTTGCAGATATGACGGTAAGATGCTTGGAATATGAAGCTGATGAGAGACCAACAATGGGTGAAGTAGAGGTGGAACTTGAGCGTGCTTTGTCGCTACAAGAACAACAAGATATCGCAAACACCAACGTTTCTCTCCTCTCTGTTTACCCTCCCCGATATTGCAGATACAGCAGGATCATGAGTGAGGCTTCTGAAAAGAAAGTTGTAAGAATTGATATTAGTTCTGATACTGTATGTCCGTGGTGCTTTGTTGGCAAAAGAAATCTTGACAAGGCCATAGCTGCGTCCAACGATGAATACAACTTTGAGATAATATGGCATCCCTTTCTACTTAACCCCGATGCCCCTAAAGAAGGCATTGACAAGAGGGAATATTACAGAAGAAAGTTTGGATCACAGTCAGAACGGATGGAAGCTCGGATGTCTGAGGTGTTCAAGAATGTTGGTCTGGAATATACTTTGTCTGGACTCACGGGAAGCACTATTGACAGTCACAGGCTTATATATTATGCAAGACAGCAGGGTCTTGACAAGCAACATGATCTAGTTGAAGAACTTGCCGTTGGCTACTTCACACAGGGAAAATACATTGGTGACCATCAGTTTCTTCTGGAATCTGCTGCAAAGGTTGGTGTAGAAGGGGCAGAACAGTTTCTTAAGGACCCCAACAATGGATTGAAGGAGGTTGAGGAAGAGCTCAAAACATATTCAGGAAACATTACAGGGGTTCCATATTACGTGATTAATGGGAACCAAAAGTTGAGCGGTGGACAACCCCCTGAAGTGTTCTTGAGAGCTTTCAAAGTTGCTACAAGTTGA 1662 0.3099 MFLKCFGDRNSSGAGRGYPTVIEELCRPFSWAEIKKATNNFDEKRIIGDGEFSKAYKGYLKRNDGTDYAVAVKRFKVERPDGWGEFMTEVELHCQLHHPHIISLIGFCIHKKEKIIVFEYMPNGSLHGHLQGGELSWKKRLEICIGAARGLHYLQAGAKRTIIHRHIKPSYILLDHNMHPKLVGFGLSIQGARFMSKPKPIQLDIIRGTLVYAAPESYQKGIVTDKSDVYSFGIVLLEVVWGRGIYDIVREGEARDFLEKPVEEKIDPNMIGKIAPECWQVFADMTVRCLEYEADERPTMGEVEVELERALSLQEQQDIANTNVSLLSVYPPRYCRYSRIMSEASEKKVVRIDISSDTVCPWCFVGKRNLDKAIAASNDEYNFEIIWHPFLLNPDAPKEGIDKREYYRRKFGSQSERMEARMSEVFKNVGLEYTLSGLTGSTIDSHRLIYYARQQGLDKQHDLVEELAVGYFTQGKYIGDHQFLLESAAKVGVEGAEQFLKDPNNGLKEVEEELKTYSGNITGVPYYVINGNQKLSGGQPPEVFLRAFKVATS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02288 553 CDD DsbA_FrnE 352 548 - -
Cca07g02288 553 SUPERFAMILY Protein kinase-like (PK-like) 18 310 IPR011009 -
Cca07g02288 553 Pfam Protein tyrosine and serine/threonine kinase 44 305 IPR001245 GO:0004672|GO:0006468
Cca07g02288 553 Gene3D Phosphorylase Kinase; domain 1 15 120 - -
Cca07g02288 553 Gene3D Glutaredoxin 348 551 - -
Cca07g02288 553 ProSitePatterns Protein kinases ATP-binding region signature. 47 73 IPR017441 GO:0005524
Cca07g02288 553 Pfam DSBA-like thioredoxin domain 352 548 IPR001853 GO:0016491
Cca07g02288 553 PANTHER TYROSINE KINASE FAMILY PROTEIN 13 324 - -
Cca07g02288 553 SUPERFAMILY Thioredoxin-like 350 550 IPR036249 -
Cca07g02288 553 PANTHER OS07G0166700 PROTEIN 13 324 IPR045272 GO:0004714|GO:0006468
Cca07g02288 553 Gene3D Transferase(Phosphotransferase) domain 1 121 329 - -
Cca07g02288 553 ProSiteProfiles Protein kinase domain profile. 41 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02288 Cca-Chr7 51389948 51396139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02288 7 331 Receptor kinase-like Gene Family AT5G38990 42.941 7.14e-73 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Cca07g02288 PK_Tyr_Ser-Thr 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02288 - - gmx:100812131 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02288 07 51389948 51396139 Cca07g02288 07 51389948 51396139 ECH