Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02281 ATGATGGTTACTATGATGGGTTCCCTATCAACAGAGAAAGGGTGGAAGAAAGGCCCTTGGACTAGTGAAGAGGACAAGTTGCTAACTGAATATGTTTGCTTGCATGGAGAGGGTAGGTGGAGTTCGGTTTCGAAGTATACAGGATTAAATAGGAGCGGCAAAAGCTGCAGGTTAAGATGGGTAAATTATTTGAGGCCAGGCCTCAAGAAAGGTCAATTAACACCTTTGGAAGAAGAAACCATTATCGAACTACATGCAACTTTGGGTAACAAGTGGTCTACTATAGCAAAGTACTTGCCAGGTAGAACTGACAACGAGATTAAGAACTATTGGAGAACCCACTTTGGGAAGAAGAGGGAGAGATCCAAACACGAGAAGAAGCTCGGAAGGCGAAAACCAAAGGTGTTGAAACAAAAGCAACAACAACCTCATATCGTCAGCATCACGTCTCGTGAAGAGACCAAAAACCAAACAAAAACCTTTGAGACACAAAACAATATGCAACAAGAAATGGGCTTCTTGTACCCAACAATAGAGCACCAATACCACGTTCCTTTGATGCATGAGATTGAGGGATTCTCGTCCACGTGGCCAAACACTATCGTCGATGATGATGATGATTCGTGGTTTAGTTTATGGGACTTTGGTGAACGTTTTGAAGATTATGTTAACCAGTTTAGTAAATGTGTCATGCCAAATCAAGCTACCTTTGGGGTTGGAGTGGATTCCATGCAAAATCATGATAAAACTTTTTTGTTTTATTGA 765 0.4144 MMVTMMGSLSTEKGWKKGPWTSEEDKLLTEYVCLHGEGRWSSVSKYTGLNRSGKSCRLRWVNYLRPGLKKGQLTPLEEETIIELHATLGNKWSTIAKYLPGRTDNEIKNYWRTHFGKKRERSKHEKKLGRRKPKVLKQKQQQPHIVSITSREETKNQTKTFETQNNMQQEMGFLYPTIEHQYHVPLMHEIEGFSSTWPNTIVDDDDDSWFSLWDFGERFEDYVNQFSKCVMPNQATFGVGVDSMQNHDKTFLFY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02281 254 MobiDBLite consensus disorder prediction 118 145 - -
Cca07g02281 254 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Cca07g02281 254 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Cca07g02281 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 68 IPR017930 -
Cca07g02281 254 SMART sant 69 117 IPR001005 -
Cca07g02281 254 SMART sant 16 66 IPR001005 -
Cca07g02281 254 MobiDBLite consensus disorder prediction 118 138 - -
Cca07g02281 254 Gene3D - 73 118 - -
Cca07g02281 254 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 229 IPR044676 GO:0003700|GO:0006355|GO:0043565
Cca07g02281 254 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Cca07g02281 254 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Cca07g02281 254 CDD SANT 19 64 IPR001005 -
Cca07g02281 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 119 IPR017930 -
Cca07g02281 254 Gene3D - 16 69 - -
Cca07g02281 254 PANTHER MYB TRANSCRIPTION FACTOR 5 229 - -
Cca07g02281 254 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Cca07g02281 254 CDD SANT 74 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02281 Cca-Chr7 51314265 51315826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02281 14 217 MYB Transcription Factor Family AT3G30210 49.057 9.51e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g02281 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02281 K09422 - gmx:100785540 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02281 07 51314265 51315826 Cca07g02281 07 51314265 51315826 ECH