Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02279 ATGTTTCTGAAATGTTTTGGCGACGGAAATTCAAGTGGTACTGCCAGAGGGTATCCAACAGTAATTGAAGAGCTGTGCCGTCCATTTTCTTGGGCTGATATTAAGAAAGCAACCAACAACTTTCACCAATACAGACTAATTGAACTTGGAGGATTTGGTGAAGTATACAAAGGTTATTTCCGACATAATGATGCTTCTCATTATGAAGTCGCTGTGAAGCGATTATATGTGAAATACTCTATTGAAAAGGAAGAAGAGTTATTCAAGAATGAAATAGAGTTGCTCAGCCAGCTTCGTCACCCTAATATCATCTCTCTTATAGGATTCTGCAACCACAAAGATGAACATATTGTTGTTTATGAATACATGTCCAATAGATCTCTAGATATACAGCTACAAGGTGGGGAACTGTCATGGAAGGAAAGGCTAGAGATCTGCATTGGAGCAGCGCGTGGACTACACTACCTTCACGCCGGATTAAAGCGCACCATCATTCACCGTCATATCACGTCTAGCAACATTCTTTTGGATCACAGCATGCACCCAAAACTCACGGATTTCAGCCTTAGCGTAAAGGGAGCACATTTTATGTCAAAGCCTAAACCAATAGAAGTAAAGGCTGGTGATAATCCTCTTGGCTACATGGTTCCGGACAATCTCAGTACAGGTATCGTCACAGATAAAAGTGATGTTTACTCATTTGGTATAGTTCTACTAGAAGTTGTGTGCAAAAGAAGAATTTTCGACATTGTAAGAGAACCAAGAGATTTTCTGGAGAAGCCTGTTGAGGAGAATATTGATCCAAATATCATTGGTAAGATTGCACCGGAGTGTTGGCAAGTCTTTGCAGATATCATGGTAAGATGTTTGGAATATGAACCTGATGAGAGACCAACAATGGGCGAAGTAGAGGTGGAACTTGAGCGTGCTTTGTCGTTACAAGAACAACAAGATATTGCAAACACCAACGGTCCTTATACCTTAATTTCCACCACCATTATTCCCTTGGATGATAGATTCTATATATGA 1029 0.4023 MFLKCFGDGNSSGTARGYPTVIEELCRPFSWADIKKATNNFHQYRLIELGGFGEVYKGYFRHNDASHYEVAVKRLYVKYSIEKEEELFKNEIELLSQLRHPNIISLIGFCNHKDEHIVVYEYMSNRSLDIQLQGGELSWKERLEICIGAARGLHYLHAGLKRTIIHRHITSSNILLDHSMHPKLTDFSLSVKGAHFMSKPKPIEVKAGDNPLGYMVPDNLSTGIVTDKSDVYSFGIVLLEVVCKRRIFDIVREPRDFLEKPVEENIDPNIIGKIAPECWQVFADIMVRCLEYEPDERPTMGEVEVELERALSLQEQQDIANTNGPYTLISTTIIPLDDRFYI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02279 342 SUPERFAMILY Protein kinase-like (PK-like) 19 310 IPR011009 -
Cca07g02279 342 Pfam Protein tyrosine and serine/threonine kinase 45 305 IPR001245 GO:0004672|GO:0006468
Cca07g02279 342 Gene3D Transferase(Phosphotransferase) domain 1 123 329 - -
Cca07g02279 342 PANTHER TYROSINE KINASE FAMILY PROTEIN 13 330 - -
Cca07g02279 342 ProSiteProfiles Protein kinase domain profile. 41 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02279 342 Gene3D Phosphorylase Kinase; domain 1 12 122 - -
Cca07g02279 342 PANTHER OS07G0166700 PROTEIN 13 330 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02279 Cca-Chr7 51292018 51293462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02279 3 318 Receptor kinase-like Gene Family AT3G51550 40.597 1.26e-70 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Cca07g02279 PK_Tyr_Ser-Thr 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02279 - - gmx:100305395 409.838