Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02273 ATGAGGCTTGTCATATCAGCCGTATGCGTTATTGTGCTATTCTCTTGTGCAGCTGCGTATGATCCTTTGGATCCAAACGGAAACATAACGATCAAATGGGATGTTGTGTCTTGGACACCAGATGGCTATGTAGCTGTGGTAACAATGAGCAATTTCCAAATGTTTCGGCACATCATGAATCCTGGATGGACCTTGGGATGGACATGGGCAAAGAAGGAAGTTATATGGTCCATGGTAGGAGCTCAAACCACAGAGCAAGGAGACTGCTCTAAGTTCAAAGGCAATGTACCTCACTGCTGCAAGAAAACTCCAACTGTTGTAGACTTGCTCCCTGGTGTACCTTACAACCAGCAATTCTCAAACTGTTGCAAGGGTGGAGTGGTGGCAGCATGGGGCCAAGACCCTTCAGCAGCAGTCTCATCTTTCCAAGTGAGTATTGGTCTAGCTGGTACTTCAAACAAGACAGTTAAACTCCCCAAGAACTTCACTCTCTTGGGTCCAGGGCCAGGCTACACTTGTGGCCCTGCCAAGGTTGTTCCTTCCACCACTTTCCTTACACCTGACAAGCGCCGTAAGACTCAAGCACTAATGACATGGAATGTTACTTGCACATACTCACAATTTCTGGCTAGAAAGAACCCAGGTTGCTGTGTATCTTTGTCATCCTTCTACAATGAGACCATTACCCCTTGTCCCTCTTGTGCCTGTGGCTGCCAGAACAAGAGGAATTGTGTCAAGGCTGACTCTAAACATCTCAGAATGGTAGGGATTCACACTCCAAAGAAAGATAACGAACCATTGCTACAGTGCACACATCATATGTGTCCGATAAGGGTACACTGGCACGTCAAGGTCAACTATAAGGACTATTGGCGAGTCAAGATTGCCGTAACAAATTTTAATTACAGGATGAATTACTCCCTCTGGACTCTTGCTGTTCAACATCCAAATCTTAACAATGTCACCCAAGTTTTCAGCTTTGATTACAAGCCTATACTTCCCTACGAATCCATAAATGACACTGGCATGTTCTATGGCATGAAATACTTTAATGATCTCTTGATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAACTTCTTCTTCAGAAGGACGAGGATACGTTCACATTAAAGCAGGGGTGGGCATTTCCTCGCAAGGTCTACTTTAATGGTGAAGAATGCATGCTGCCACCACCTGATACATACCCGGTCCTCCCTAACTCTGCCCCTGTGAACTTATTGAATTTCCCAGCATTCATTTTCATAATGCTTGTCATGCTAGCTGTTTAG 1293 0.4509 MRLVISAVCVIVLFSCAAAYDPLDPNGNITIKWDVVSWTPDGYVAVVTMSNFQMFRHIMNPGWTLGWTWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVVAAWGQDPSAAVSSFQVSIGLAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTTFLTPDKRRKTQALMTWNVTCTYSQFLARKNPGCCVSLSSFYNETITPCPSCACGCQNKRNCVKADSKHLRMVGIHTPKKDNEPLLQCTHHMCPIRVHWHVKVNYKDYWRVKIAVTNFNYRMNYSLWTLAVQHPNLNNVTQVFSFDYKPILPYESINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKDEDTFTLKQGWAFPRKVYFNGEECMLPPPDTYPVLPNSAPVNLLNFPAFIFIMLVMLAV 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02273 430 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Cca07g02273 430 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0031225
Cca07g02273 430 PANTHER COBRA-LIKE PROTEIN 4 429 - -
Cca07g02273 430 PIRSF COBRA 1 430 IPR006918 GO:0010215|GO:0031225
Cca07g02273 430 PANTHER PROTEIN COBRA 4 429 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02273 Cca-Chr7 51177258 51179516 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02273 1 430 COBRA Gene Family AT3G29810 62.870 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02273 - - gmx:100783410 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02273 07 51177258 51179516 Cca07g02273 07 51177258 51179516 ECH
Cca07g02273 07 51177258 51179516 Cca09g00326 09 7650046 7653115 ECH
Cca07g02273 07 51177258 51179516 Cca09g00326 09 7650046 7653115 PCT