Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02272 ATGGGCTTCTCTCTGTTACCAAAAGCAACTCCTTGCATTGTGTTCTTGGTTCTGCTGTCCTGTACTTGCTTCACTTCAACAGATGCATATGATCCGCTTGACCCAAATGGGAATATCACAATCAAATGGGATATTATAAGCTGGACCCCTGATGGATACGTAGCTGTTGTTACAATGAACAACTTCCAACAATATCGTCATATCGCTTCACCTGGGTGGTCACTAGGATGGACATGGGCGAAAAAGGAGGTAATATGGAGTATGATGGGAGGGCAAACCACTGAACAAGGGGATTGTTCAAAATTTAAGGGAGGTATTCCACATTGCTGTAAGAAAGATCCAACGGTTGTAGATTTGCTTCCTGGAACACCTTACAATCAACAAATTGCAAATTGCTGCAAAGGTGGGGTGCTCACTTCATGGGTGCAGGATCCAACCAATGCAGTTTCATCATTTCAAGTCAGTGTTGGTAGAGCTGGAACCACAAACAAAACTGTCAAAGTCCCAAAGAACTTCACCTTGAAAGCACCAGGACCAGGATATACTTGTGGACCTGCTAAGATTGTGCGACCCACTCAATTCATTCAAGCAGACAAAAGGAGAGTGACCCAGGCACTAATGACATGGAATGTGACATGCACATACTCACAATTTCTAGCTCAGAAAACTCCCTCTTGCTGTGTCTCGCTTTCATCTTTCTATAATGATACTATTGTGCCCTGCCCAACATGTGCATGTGGCTGCCAAAGTAACTCATCTCAGTCAGGGAGCTGTGTAAATCCAGATACGCCACATTTGGCATCGGTTGTTTCTGGCTCTGGGAAGAATAACTTTTCACCTTTGGTTCAATGTACTAGTCATATGTGCCCAATCCGAATCCACTGGCACATTAAGCTTAATTACAAGGAATACTGGCGCGTAAAGGTTACTATTACTAATTTTAATTACAGGATGAATTATTCTGAGTGGAACTTGGTTGTTCAACACCCAAACTTTGACAATTTGACTCAACTCTTCAGTTTCAACTACAAGTCATTGACTCCTTATGGTTCAATAAATGATACAGCAATGCTTTGGGGAGTTAAGTTCTATAATGATTTTCTCAACCAAGCTGGCCCTAATGGCAATGTTCAATCAGAGCTACTCTTCCGAAAGGATAAAGCAACTTTTACTTTTGACAAGGGTTGGGCTTTTCCTCGAAGGATCTACTTCAATGGTGACAACTGTGTGATGCCACCACCTGATTCTTATCCGTGGTTACCTAATGCTGGTTCTAGGCAAGAGGTTTCCTTGTTTGCTTTAGTGATAGCTTCTTTGGTAGCCTTGGTATTTTATGCTCACGCATAA 1347 0.4232 MGFSLLPKATPCIVFLVLLSCTCFTSTDAYDPLDPNGNITIKWDIISWTPDGYVAVVTMNNFQQYRHIASPGWSLGWTWAKKEVIWSMMGGQTTEQGDCSKFKGGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLTSWVQDPTNAVSSFQVSVGRAGTTNKTVKVPKNFTLKAPGPGYTCGPAKIVRPTQFIQADKRRVTQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVPCPTCACGCQSNSSQSGSCVNPDTPHLASVVSGSGKNNFSPLVQCTSHMCPIRIHWHIKLNYKEYWRVKVTITNFNYRMNYSEWNLVVQHPNFDNLTQLFSFNYKSLTPYGSINDTAMLWGVKFYNDFLNQAGPNGNVQSELLFRKDKATFTFDKGWAFPRRIYFNGDNCVMPPPDSYPWLPNAGSRQEVSLFALVIASLVALVFYAHA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02272 448 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0031225
Cca07g02272 448 PANTHER PROTEIN COBRA 7 447 IPR006918 GO:0010215|GO:0031225
Cca07g02272 448 PANTHER COBRA-LIKE PROTEIN 7 447 - -
Cca07g02272 448 PIRSF COBRA 3 448 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02272 Cca-Chr7 51162650 51176577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02272 13 443 COBRA Gene Family AT3G02210 76.212 0.0 705
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02272 - - gmx:100783820 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02272 07 51162650 51176577 Cca07g02272 07 51162650 51176577 ECH
Cca07g02272 07 51162650 51176577 Cca09g00325 09 7644751 7649271 ECH
Cca09g00326 09 7650046 7653115 Cca07g02272 07 51162650 51176577 PCT
Cca07g02272 07 51162650 51176577 Cca09g00325 09 7644751 7649271 PCT