Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02271 ATGGCCCAGTCCTTCGGTCAAACTGAGATTAACTGGGACAAGCTAGATAAAACTAAGTTCTATGTCGTAGGAGCTGGACTCTTTACAGGTGTTTCTGTGGCACTATACCCTGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCCACAAAGGATGCTGTTGAGAGAAATGTGTTTTCTGTTGTGAAAGGACTACTTAAAACAGATGGCATCCCTGGTTTGTATAGAGGGTTTGGTACAGTTATCACTGGTGCAATTCCTGCCAGAATCATATTCCTATCCGCTCTAGAGACCACAAAGGTGGCTGCCTTCAGAATGCTTGAACCGTTTAAACTATCTGAAACTACCCAAGCTGCCATTGCAAATGGAGTTGCAGGCATGACATCATCGCTTTTAGCTCAATCTGTGTTTGTACCGATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCTCAATATAGTGGAGGTTTGGATGTTGCTCGCAAGGTTTTAAGGTCTGATGGCATCCGAGGATTGTATCGAGGGTTTGGTCTGTCTGTTATCACTTATTCTCCTGCTAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGCTTCGTTTGGAGATTCCTGGACCATGGTGCCAAACATGATGAAGGCACTCCTAGTGTGCCGAAAATTATGTTTGTTCAGGCTACTGGAGGGATTATTGCTGGTGCAACTTCATCCTGTATTACAACCCCATTGGATACTATCAAGACACGTTTACAGGTAATGGGACATGAAAATAGAAGCTCTATAAAACAAGTTGTTAAAGATTTAATCAATGAAGATGGTTGGAAGGGCTTTTATAGAGGGTTTGGTCCAAGATTTTTTAGCATGTCAGCATGGGGCACTTCAATGATATTGACGTATGAGTATCTGAAACGTGTATGCTCTAAAGATGAATAG 945 0.4296 MAQSFGQTEINWDKLDKTKFYVVGAGLFTGVSVALYPVSVVKTRLQVATKDAVERNVFSVVKGLLKTDGIPGLYRGFGTVITGAIPARIIFLSALETTKVAAFRMLEPFKLSETTQAAIANGVAGMTSSLLAQSVFVPIDVVSQKLMVQGYSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVITYSPASAVWWASYGSSQRFVWRFLDHGAKHDEGTPSVPKIMFVQATGGIIAGATSSCITTPLDTIKTRLQVMGHENRSSIKQVVKDLINEDGWKGFYRGFGPRFFSMSAWGTSMILTYEYLKRVCSKDE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02271 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
Cca07g02271 314 Pfam Mitochondrial carrier protein 227 313 IPR018108 -
Cca07g02271 314 Pfam Mitochondrial carrier protein 118 205 IPR018108 -
Cca07g02271 314 Pfam Mitochondrial carrier protein 27 100 IPR018108 -
Cca07g02271 314 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 7 314 - -
Cca07g02271 314 Gene3D Mitochondrial carrier domain 19 314 IPR023395 -
Cca07g02271 314 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Cca07g02271 314 PRINTS Mitochondrial carrier protein signature 177 195 IPR002067 GO:0055085
Cca07g02271 314 PRINTS Mitochondrial carrier protein signature 233 255 IPR002067 GO:0055085
Cca07g02271 314 PANTHER MITOCHONDRIAL CARRIER PROTEIN-RELATED 7 314 - -
Cca07g02271 314 SUPERFAMILY Mitochondrial carrier 13 306 IPR023395 -
Cca07g02271 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 224 309 IPR018108 -
Cca07g02271 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 204 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02271 Cca-Chr7 51153460 51160641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02271 10 314 Chloroplast and Mitochondria Gene Families AT5G15640 75.570 7.52e-174 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02271 K15121 - gmx:100781796 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02271 07 51153460 51160641 Cca07g02271 07 51153460 51160641 ECH
Cca09g00323 09 7599187 7606673 Cca07g02271 07 51153460 51160641 PCT