Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02270 ATGTTTCTCAATTGTTTGGGCTTCAACCGTTCCAATCACACAACTGACACAAGTTCATCACACAGACAGTACCCAACGgattctgcgatgatgaaaaagagaagtttctggtattttggcttGTGCCTAAAAGGAGCACGTTTTATGTCTAAGCCAAAATCAATTCAAGTGGATCGAATTATAGGTACTCTTGGCTACATGGCTATGGAATATGCCATCAACGGTACCGTGACAGATAAATGTGACGTTTTTTCATTTGGTATGATCCTACTAGAAGTTGTGTGTGGAGAGAACTATTTAGAAATGCCAATAGAATTTATGGAGAGGCCTGTTGAGGAGAAAATTGACCCGAATATCCAAGGAAAAATTGCACCACAATGTTGGCAAGTGTTTATAGATATAGTCCAGAGATGTGTCAAGCTTGAACCTGATGAGCGACCAGCAATGGGTGAAGTTGAGGTTGAACTTGAGCATGCTCTGTCCTTGCAGGAACAAGAGGACATCACAAACACTAATGATGAATATACTTTATTGTCCAAAACCATTATTGACCTAAGACTAGAGTGGGAATATTTTGAGCGTGCTCTGTCATTGCAACAAAAGGAAGATATATCCCCAGAGACAGTGACTTAG 633 0.3776 MFLNCLGFNRSNHTTDTSSSHRQYPTDSAMMKKRSFWYFGLCLKGARFMSKPKSIQVDRIIGTLGYMAMEYAINGTVTDKCDVFSFGMILLEVVCGENYLEMPIEFMERPVEEKIDPNIQGKIAPQCWQVFIDIVQRCVKLEPDERPAMGEVEVELEHALSLQEQEDITNTNDEYTLLSKTIIDLRLEWEYFERALSLQQKEDISPETVT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02270 210 PANTHER OS07G0166700 PROTEIN 38 179 IPR045272 GO:0004714|GO:0006468
Cca07g02270 210 SUPERFAMILY Protein kinase-like (PK-like) 47 157 IPR011009 -
Cca07g02270 210 Pfam Protein tyrosine and serine/threonine kinase 59 154 IPR001245 GO:0004672|GO:0006468
Cca07g02270 210 Gene3D Transferase(Phosphotransferase) domain 1 37 184 - -
Cca07g02270 210 ProSiteProfiles Protein kinase domain profile. 1 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02270 210 PANTHER TYROSINE KINASE FAMILY PROTEIN 38 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02270 Cca-Chr7 51136230 51152730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02270 5 167 Receptor kinase-like Gene Family AT3G51550 29.032 2.04e-18 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g02270 PK_Tyr_Ser-Thr 9e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02270 - - gmx:100781132 248.054