Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02262 ATGGCCGAGGCAGTTGTCTCCCTTGCAATTGAGAGGCTTTACGAACTACTGATTGAAGATGCCAGATTGTTTAATGGGGTGAGTGACAAAGTCAGGAAAACGCAAAATGAATTAATGAGTATCCAATGCTTCCTGAGCGATGCTGAGAGCAGGCAGGATGAAAGTGAGATTCTTAAGAATTGGATTTCAGAGATCAGAAAATTAGCTTATTGTGCAGAGGATGTAATTGAAATTTATGCTATCAAGGTTGCATTTGACATGATTGTTAAAACTAAAAATCCACTCTCCAGAGCTATATATCTTCGGAACTTCAGATCTGATCTCTCCAGAGCTATATATCGTCGGAACTTCAGATCTGATCTCATAACAATCAATAATGGAATAATTGACCTCACAAGAACATTACAAACTTATGGTTTGACTGCAGCAAGAGACAATGAAGAGAATCGCTCTGCATTTGAGAGGCAACGACGATTGAGATGGTCTTATCCTCATATAGTTGAAGAGTTCATTGTTGGCTTAGATGACGACATAAGCAAAGTGGTGAAATGGCTAGTAAATGAAAATCAGCATTGTCGAGTTGTATATATTTGTGGAATGGGTGGTATTGGTAAAACTACTCTTGCCAAAAGCATTTACCATCACAATAATATTAGACCATACTTTGATGCTTTTGCTTGGGCGCATATATCCCAACAATGCAAGAAAAGAGATGTCTGGGAGGGAATTTTACTGAAGCTTACTTATCCTTCGGATGAGGAAAGGGATGAGATTTTGAAAATGGAAGATGATGAAGTGGCAAGCAAGTTGTTTGAAGTTCAGCAAGAGAAAAAATGTTTGATCATCCTGGATGACATATGGAGCAATGAAGATTGGGACATTCTAAGTCCGGCTTTTCCATCAGAAAATACAAGGAGTAAGATAGTGTTTACATCCCGCAACAAAGACATTTTGCGTGTAGATCCTAATGGCCTTCTTCACCAACCAAGTTGCTTAAATGAAGAGGATAGTTGGACATTGTTTCAGAACAAAGCTTTCCCAAGACAACAAAACTCAGAATCCATAATTTCCGACGACTTTAAAAGATTAGGCAAAGAAATAGTTACAAAGTGTGCTGGTCTGCCATTGGCTATTGTCACCCTTGGGGGGCTTTTGGCTACAAAGGATACAGTCAGTGAATGGAAAACAATACATAGGTATCTAAGTTCACACCCAATAGGAGGAGAGTTACCTCAAAATCAAATGTTAGGCAAAGTGTTGGATTTAAGTTACCAGAACTTGCCTGTTCAACTGAAACCATGTTTGCTCTATTTAAGTCAATTCCCTAAAGACTCTGAGATACCAAGAACTAAACTAATTCAGTTATGGGTAGCAGAAGGTTTTGTTTCATCTCGATATGTTATTGAAGGAAATGAGACAATGGAGGATGTTGCTGAACGCTACTTCAGTAACTTAATTAGCCGCTGCATGGTTCAAGTTGGTCAGATGGGGTCTACTGGTAGAATTAAAACCTGTCGGCTCCATGATTTAATGCGTGATCTGTGTTTGTCAAAGGCCAAAAAAGAAAATTTTCTCTACATTATTGGTGGATCACAACAACATGGTGCCGTTGATGTTGCTTCTTCATCTAATTTATCAGATGCAAGACAAATTGATGAGGTTCGCAGGCTTGCTGTTTTCTTGGGTCAACATGTTGATCAATTGATTCCACGGGACAAGCAAGTGAATGAACACCTCAGGTCCCTTGTCTTTTTACATGACAGGAAATGTAGGATGGAAAATTGGGACCTAATTAAAGATGTTTTTGTGAAATTCAAACTACTTAGAGTTTTAGATCTTGAAGGAATTAAGGGGATGAAGGAAAAGTCATTGCCTAAAGAAGTGGGAAATCTTTTATGGTTGAAGTTTCTGAGCCTAAAAAGGACTCGTATACAAATACTGCCATCTTCCTTGGGCAATTTGGAGTATTTGCAATTCCTGAATTTGCAAACTGTCAACAAAGTGGGTTGGGATTCAATTGTGGAAATTCCAAATGTAATATGGAAGTTGAAACGGTTGAGACATCTATATCTTCCAAAATGGTGTGGAAATGCTGCTATCAACCTGCAACTGGAAAATCTAATCAATTTACAGACCCTAGTAAATTTTCCTGCCGGCAAATGTGACGTGAAAGATCTTTTAAAATTGAAAAGGCTCAGAAAATTAGTACTGAATGACCCAAGACATTTTCAAAAGTTGACTGAAAGTTTCAATCCCCCTAATAAGAGGCTGTCCTGCCCTCCATAA 2286 0.385 MAEAVVSLAIERLYELLIEDARLFNGVSDKVRKTQNELMSIQCFLSDAESRQDESEILKNWISEIRKLAYCAEDVIEIYAIKVAFDMIVKTKNPLSRAIYLRNFRSDLSRAIYRRNFRSDLITINNGIIDLTRTLQTYGLTAARDNEENRSAFERQRRLRWSYPHIVEEFIVGLDDDISKVVKWLVNENQHCRVVYICGMGGIGKTTLAKSIYHHNNIRPYFDAFAWAHISQQCKKRDVWEGILLKLTYPSDEERDEILKMEDDEVASKLFEVQQEKKCLIILDDIWSNEDWDILSPAFPSENTRSKIVFTSRNKDILRVDPNGLLHQPSCLNEEDSWTLFQNKAFPRQQNSESIISDDFKRLGKEIVTKCAGLPLAIVTLGGLLATKDTVSEWKTIHRYLSSHPIGGELPQNQMLGKVLDLSYQNLPVQLKPCLLYLSQFPKDSEIPRTKLIQLWVAEGFVSSRYVIEGNETMEDVAERYFSNLISRCMVQVGQMGSTGRIKTCRLHDLMRDLCLSKAKKENFLYIIGGSQQHGAVDVASSSNLSDARQIDEVRRLAVFLGQHVDQLIPRDKQVNEHLRSLVFLHDRKCRMENWDLIKDVFVKFKLLRVLDLEGIKGMKEKSLPKEVGNLLWLKFLSLKRTRIQILPSSLGNLEYLQFLNLQTVNKVGWDSIVEIPNVIWKLKRLRHLYLPKWCGNAAINLQLENLINLQTLVNFPAGKCDVKDLLKLKRLRKLVLNDPRHFQKLTESFNPPNKRLSCPP 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02262 761 Gene3D - 5 112 - -
Cca07g02262 761 PANTHER DISEASE RESISTANCE RPP8-LIKE PROTEIN 3-RELATED 2 736 - -
Cca07g02262 761 Gene3D - 154 322 IPR027417 -
Cca07g02262 761 PANTHER DISEASE RESISTANCE PROTEIN RP 2 736 IPR044974 GO:0006952
Cca07g02262 761 CDD RX-CC_like 2 133 IPR038005 -
Cca07g02262 761 Gene3D - 424 519 IPR036388 -
Cca07g02262 761 SUPERFAMILY RNI-like 576 747 - -
Cca07g02262 761 CDD AAA 172 288 - -
Cca07g02262 761 PRINTS Disease resistance protein signature 194 209 - -
Cca07g02262 761 PRINTS Disease resistance protein signature 273 287 - -
Cca07g02262 761 PRINTS Disease resistance protein signature 371 385 - -
Cca07g02262 761 PRINTS Disease resistance protein signature 603 619 - -
Cca07g02262 761 Pfam NB-ARC domain 176 424 IPR002182 GO:0043531
Cca07g02262 761 Pfam Rx N-terminal domain 5 83 IPR041118 -
Cca07g02262 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 438 IPR027417 -
Cca07g02262 761 Gene3D Ribonuclease Inhibitor 548 758 IPR032675 -
Cca07g02262 761 Gene3D - 331 423 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02262 Cca-Chr7 50976317 50983113 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02262 172 405 WRKY Transcription Factor Family AT5G45050 24.051 2.14e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02262 - - vra:106759398 1134.01