Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02260 atggcggccaaactctcagacttgcgagtttcCTTAAAAGGACCACATTATGCATCAAAGCCAACACCAAAGACAATATCAAAAGATGGCTTTATAGGTACATATGGTTATGGGGCTCCCGAGATTTCAGAAAACAATGCATTAACAGATAAATGCGATGTTTACTCCTTTGGCGTAGTTCTACTAGAAGTGGTATGCAAAGACAAGCTAAAAGTTGTTGAGAAGAGGCAGAAGCAGCCTGTTGAGGAGAATATTGATCCGAGTCTGAAAGGAAAGATTGCAGCAGAGTGTTGGGAGGTATTTATGGATATCACAGAAAGATGCTTGAAGTTTGATCCAAATGAGCGACCAGCAATGGGTGAAGTTGAAGTTCAGCTTGAGCTTGCACTGTCACTGCAGGAAGAAGCAGATGTCATAAATACTTGTGATCATTTTGAATTTCGCAGGGAAGTAGTAATGTTTTGGAATTGTTTTGGCAACACAAATTCATCTCGGAGAAACTATCCAATAGTAATTGGAGAGCTCTGCCGTCAATTTTCTCTCGCGGATCTTCGGAAATCAACCAATAACTTCCATCAAAACAGAGAAATTGGAAGTGGAGGATATGgttttggccttGGCGTAAAGGGAGCACATTTTACATCAAGGCCCAAACCAATTCAATTAGAGAATGTTAAAGGTACTATTGGCTACATAGCCcctgagcatctcaaggatggtaccctcacagataaatgtgatgtttactcatttggagtgattctactggaagtggcgtggggaagaacaCTTTTCGACATGACAAGTAGTGGAAATTATCTGGAGAAGCCTGTTGAGGAGGATATTGATCCGAATATCAAAGGACAGATTGCAACAAAGTGTTGGCAAGTCTTTATAGATATCACCCAAAGATGCTTGAAGCATGAAGCAGATGAGCGACCAACAATGGGTGAAGTAGATTTGGAACTTGGACATGCTTTGTTATTGCAGGAACAAGCAGATATCTCAAACACTGATGGTGAATATATCTTATTGTCCAAAACCATTATTAACCAATGCAAGGATTAG 1068 0.3483 MAAKLSDLRVSLKGPHYASKPTPKTISKDGFIGTYGYGAPEISENNALTDKCDVYSFGVVLLEVVCKDKLKVVEKRQKQPVEENIDPSLKGKIAAECWEVFMDITERCLKFDPNERPAMGEVEVQLELALSLQEEADVINTCDHFEFRREVVMFWNCFGNTNSSRRNYPIVIGELCRQFSLADLRKSTNNFHQNREIGSGGYGFGLGVKGAHFTSRPKPIQLENVKGTIGYIAPEHLKDGTLTDKCDVYSFGVILLEVAWGRTLFDMTSSGNYLEKPVEEDIDPNIKGQIATKCWQVFIDITQRCLKHEADERPTMGEVDLELGHALLLQEQADISNTDGEYILLSKTIINQCKD 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02260 355 PANTHER OS07G0166700 PROTEIN 162 200 IPR045272 GO:0004714|GO:0006468
Cca07g02260 355 PANTHER OS07G0166700 PROTEIN 203 346 IPR045272 GO:0004714|GO:0006468
Cca07g02260 355 Pfam Protein tyrosine and serine/threonine kinase 33 125 IPR001245 GO:0004672|GO:0006468
Cca07g02260 355 PANTHER TYROSINE KINASE FAMILY PROTEIN 162 200 - -
Cca07g02260 355 Pfam Protein kinase domain 218 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02260 355 SUPERFAMILY Protein kinase-like (PK-like) 131 319 IPR011009 -
Cca07g02260 355 SMART serkin_6 46 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02260 355 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 147 - -
Cca07g02260 355 Gene3D Transferase(Phosphotransferase) domain 1 180 344 - -
Cca07g02260 355 Gene3D Transferase(Phosphotransferase) domain 1 1 148 - -
Cca07g02260 355 PANTHER TYROSINE KINASE FAMILY PROTEIN 203 346 - -
Cca07g02260 355 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02260 355 PANTHER OS07G0166700 PROTEIN 1 147 IPR045272 GO:0004714|GO:0006468
Cca07g02260 355 SUPERFAMILY Protein kinase-like (PK-like) 26 123 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02260 Cca-Chr7 50958114 50961182 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02260 224 330 Receptor kinase-like Gene Family AT2G23200 39.024 1.48e-19 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Cca07g02260 Pkinase 1.6e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02260 - - ccaj:109791407 276.944