Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02258 atggcggccaaactctcagacttgcgagtttcCTTAAAAGGACCACATTATGCATCAAAGCCAACACCAAAGACAATATCAAAAGATGGCTTTATAGGTACATATGGTTATGGGGCTCCCGAGATTTCAGAAAACAATGCATTAACAGATAAATGCGATGTTTACTCCTTTGGCGTAGTTCTACTAGAAGTGGTATGCAAAGACAAGCTAAAAGTTGTTGAGAAGAGGCAGAAGCAGCCTGTTGAGGAGAATATTGATCCGAGTCTGAAAGGAAAGATTGCAGCAGAGTGTTGGGAGGTATTTATGGATATCACAGAAAGATGCTTGAAGTTTGATCCAAATGAGCGACCAGCAATGGGTGAAGTTGAAGTTCAGCTTGAGCTTGCACTGTCACTGCAGGAAGAAGCAGATGTCATAAATACTTGTGATCCTCAGGCTTTGTTTCTGCTTTGCCTTCATCTCCAGGTATCTAAAATCGGGATAATGTTTATCAAATATATGGGCTTCTGCTGTTCGAAGCAAACAAGTTCATCTCAGCGACAcaacatggtggccaaactcgtagacttccgaatttcCTTAAAAGGACCACATTATGCATCAAAGCCAAAACCAAAGACAATATCAAAAGATGGCTTTATAGGTACATATGGATATGTGGCTCCCGAGATTTCAGAAAACAATGCTTTAACAGATAAATGCGATATTTACTCCTTTGGTGTAGTTCTACTAGAAGTGGTATGCAAAGACAAGTTAAAAATTGTTGAGAATAGGCAGAGGCAGCCTGTTGAAGAGAATATTGATCCAAGTCTGAAAGGAAAGATTGCAGCAGAATGTTGGGAGGTATTTATGGATATAACAGAAAGATGCTTGAAGTTTGATCCAAATGAGCGACCAGCAATGGGTGAAGTAGAGGTTCAGCTTGAGCTTGCTCTGTCACTGCAGGAAAAAGCAGATATCAGAAATACTTGTGAAGATTATACCTTATTATCTTTGACTACTCTTAATTAG 1011 0.366 MAAKLSDLRVSLKGPHYASKPTPKTISKDGFIGTYGYGAPEISENNALTDKCDVYSFGVVLLEVVCKDKLKVVEKRQKQPVEENIDPSLKGKIAAECWEVFMDITERCLKFDPNERPAMGEVEVQLELALSLQEEADVINTCDPQALFLLCLHLQVSKIGIMFIKYMGFCCSKQTSSSQRHNMVAKLVDFRISLKGPHYASKPKPKTISKDGFIGTYGYVAPEISENNALTDKCDIYSFGVVLLEVVCKDKLKIVENRQRQPVEENIDPSLKGKIAAECWEVFMDITERCLKFDPNERPAMGEVEVQLELALSLQEKADIRNTCEDYTLLSLTTLN 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02258 336 Pfam Protein tyrosine and serine/threonine kinase 33 125 IPR001245 GO:0004672|GO:0006468
Cca07g02258 336 PANTHER OS07G0166700 PROTEIN 1 148 IPR045272 GO:0004714|GO:0006468
Cca07g02258 336 Pfam Protein kinase domain 184 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02258 336 PANTHER TYROSINE KINASE FAMILY PROTEIN 181 331 - -
Cca07g02258 336 SUPERFAMILY Protein kinase-like (PK-like) 181 309 IPR011009 -
Cca07g02258 336 SMART serkin_6 46 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02258 336 Gene3D Transferase(Phosphotransferase) domain 1 1 145 - -
Cca07g02258 336 Gene3D Transferase(Phosphotransferase) domain 1 173 329 - -
Cca07g02258 336 SUPERFAMILY Protein kinase-like (PK-like) 26 123 IPR011009 -
Cca07g02258 336 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02258 336 PANTHER TYROSINE KINASE FAMILY PROTEIN 1 148 - -
Cca07g02258 336 PANTHER OS07G0166700 PROTEIN 181 331 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02258 Cca-Chr7 50929687 50938862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02258 182 322 Receptor kinase-like Gene Family AT5G39000 38.710 9.75e-22 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Cca07g02258 Pkinase 3.4e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02258 - - ccaj:109791407 283.493