Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02253 ATGTCTGGAAAGGCTTTGAAATCCTTGAAGGATGAAAACCCAGATTTACAGAAGCAAATTGGATGCATCACTGGATTTTTTCAGCTCTTTGACCGCCACCGTTTCATCACAGGCCAAGGCACTAGTAGCTACATTCAACACAATACTTCAGTTGGAAGCGGTAATGAAATCAAAGAGCTCAATGGTACAATTCTGAAAGCTAAGGCAAAGAATCTGAAGAATGCCAGAGAAAAGCAACAATTCTCCACAGAATCATCCATAACTTCTTTGTCTTCATCATCTTGTTCATCTAGCATGTCTTCCCTCGAGTTTAACAGAACAATTCAGACACAATCCCCATCAAGAAATCATATCAAAATTCATGAAAACACAAATCCAAAAGTAGCAAAGAAGCAACTTGATACGCCATGCCAGCAATCACCAGATTTCCATCATATTGTCAAAGACTCGATGCATAAGGAAGCTCAAGGATTGTCTCTGAAAACTGTGGTTAAAGAGGAAAAGAAGGCTCACACTAATGTCTTGAAACATATAGACTCCCCTAGGCCTTTGAGGTCACACAGATCCTTCAATGAAGGGCATACAGTTTCCAGTGAACTATCACACCCTCTTGCCAAGTCCAAGAAAACACCTTGGGACTCGCCGCGACTCTCTTATGACGACACATTCAAATCTGCCACAAAGCATAAGGAACTTCCAAGGCTTTCCTTGGACAGCAGAGAAGGGTCCAATAAAGGTTTCAATGAAGGAAACAAGTTGAAGGGTTCACATAAAGGGTATGGGAGAAACTCTAGCACAATGATCAACCAGCCTCATGAACCAGAAACTTCCAAAAGATCTTCCAGTCTTGTAGCTAAGTTGATGGGACTTGAAGCCCTCCCAGAGTGCACACAAACTTGTGGGGGTCCAATGGGAACACCTAATTGCCCTATCAAAAAGAATGAGCTCTTGGGAAGATCTAGCACAAGTGATGAAGACAAGCAACACCAAAGATTCACCTTGCCTCAGTCTAGAAAGGCTGATTCAATCACAAATGTGACACCATATTCGCGATTTTCACTAGAATCATCTCTGTGGAGGCAACCTGATGCAAGCCAAAGCTCTCAATTACAAGCTTCCAAGGGAAGTGAATCTGTCACAAAAGCCTCAAAGCCCTCTCTCACTGTATATGGGGAAATTGAGAAAAGAGTGGCGGAACTCGAGTTCAAGAAGTCTGGAAAGGATCTCAGAGCCCTTAAACAGATTCTTGAAGCAATGCAAAGACATAAAGATTCATTAGATATTGCTGGAGATCAGGCTTCAAATTCCCCATCTGACAATAGCAATAGTACCAGTCTCAATGAAAGCTCAAAACTACAAAGCCCAAGAGGACCACAAAAAGACATGGTATCTGTCACAATTGACTTGTCAAATTCAACCCGCGGTAGTAAATTACCAATTGTCATCATGAAACCAGCAAAAGTTACTAGAAAACACAATAATCCTTCTTCTACAGAATTGCCAATTCATGGTAAATCTGGTCTCAGCAGGTGTTCTTCTAATCATCCCACAAATGGAAGATTGATTCAGAAGCAAACTGCTAAAGTTAACAGTTCAACAACAAAAAGCATCAAGGATCATTTTGGTCAACAAGTTCTTTCATCAGATAAAAATAATAACATAAGAACTTCAAAGTCGATGCAATCCTTGAAAGTTCCTCAAGACAGAAGTGAAGAAAGTACCACCAACTCCGGTTATATAACAGTGACTGGGAGCCCCAGATTACAAAAGAAGTATGGTTTGGATAGGCGTTCGCAACCAATTAGTCCATCATCAGATTCCAGGATTAACAGAAGAGAGCACAATAGGCAACCTATGGAATTGTCTTCTCCAAGTACAACACCGAGACATAATAAGTTCTCGACTTCGCAGCAAAGAAATGAACGCATCAGTGAGATCAGCTGTCACTGGAGGGATTTTAAGCATCATCTTAATGTCATTTCGGATTTTGACGACAAAAGCTCAGCCAGTCATAGTGAGGCTGAATTCATTCGCATTGATCAATCCGGAAAGATCATTAACACCTCCATCCAGAATGCATTTGAAGATCTGAGGAAGGAACTATCCAAGGCTGAGGCAACAGTCACTGCAGAACAACCAAGTCCTGTGTCTGTTCTTGATGCAGCATTCTATAGGGAAGATCCACCATCTCCAGTGAAAAAGAAATCAGACAACTCAAAAAAATTGTGTGAAGCTTTAAGCACTGATGATGATAGTGAACAGAACTCGGTGGAAATTCAAGAAATTGACTGGTTTGATGAGAAATTCATCAATTTCAATAACATTAAGGATCCTGACCACAAGTACATATCAGAAATACTGTTAGCATCAGGTCTTCTCAGTGGCCACAGCCCTAGCCAGATATTTCATTCACCGGGTCACTTGATTAATCCAAACTTGTTCTTTGAACTTGAACAAATGAAGAAAAAGATGAGGCATTTTGATGATGAAGTCAGTGCCACGAAGATTCCCAGAATGCAAAGAAAACTCATATTTGATGTTGTAAATGACATTTTAGTTCAAAAACAGATATTGCACAGTTCTTCTGCATCAACACTAAAAGGGAAGCAGCTTCTGGATGAGCTATGCACAGAAATAGATCAGTTGCAAGCTCAAAATGGGAATGTGAGCATAGTGCATGAGGATGAGGATTTGAAGCATCACCATGCAATTTGGACTAACTGCTGCAGTGAGGTACCAAATATTGTGTTGGATATTGAACGTTTGATCTTTAAAGATTTGGTAAATGAGGTTGTGAGAGGTGATGTTGCAAAGCATCGTACACATTGCAGGCAACTGGTGTTTCCCAAGTAG 2853 0.4069 MSGKALKSLKDENPDLQKQIGCITGFFQLFDRHRFITGQGTSSYIQHNTSVGSGNEIKELNGTILKAKAKNLKNAREKQQFSTESSITSLSSSSCSSSMSSLEFNRTIQTQSPSRNHIKIHENTNPKVAKKQLDTPCQQSPDFHHIVKDSMHKEAQGLSLKTVVKEEKKAHTNVLKHIDSPRPLRSHRSFNEGHTVSSELSHPLAKSKKTPWDSPRLSYDDTFKSATKHKELPRLSLDSREGSNKGFNEGNKLKGSHKGYGRNSSTMINQPHEPETSKRSSSLVAKLMGLEALPECTQTCGGPMGTPNCPIKKNELLGRSSTSDEDKQHQRFTLPQSRKADSITNVTPYSRFSLESSLWRQPDASQSSQLQASKGSESVTKASKPSLTVYGEIEKRVAELEFKKSGKDLRALKQILEAMQRHKDSLDIAGDQASNSPSDNSNSTSLNESSKLQSPRGPQKDMVSVTIDLSNSTRGSKLPIVIMKPAKVTRKHNNPSSTELPIHGKSGLSRCSSNHPTNGRLIQKQTAKVNSSTTKSIKDHFGQQVLSSDKNNNIRTSKSMQSLKVPQDRSEESTTNSGYITVTGSPRLQKKYGLDRRSQPISPSSDSRINRREHNRQPMELSSPSTTPRHNKFSTSQQRNERISEISCHWRDFKHHLNVISDFDDKSSASHSEAEFIRIDQSGKIINTSIQNAFEDLRKELSKAEATVTAEQPSPVSVLDAAFYREDPPSPVKKKSDNSKKLCEALSTDDDSEQNSVEIQEIDWFDEKFINFNNIKDPDHKYISEILLASGLLSGHSPSQIFHSPGHLINPNLFFELEQMKKKMRHFDDEVSATKIPRMQRKLIFDVVNDILVQKQILHSSSASTLKGKQLLDELCTEIDQLQAQNGNVSIVHEDEDLKHHHAIWTNCCSEVPNIVLDIERLIFKDLVNEVVRGDVAKHRTHCRQLVFPK 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02253 950 MobiDBLite consensus disorder prediction 258 282 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 489 509 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 190 204 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 490 509 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 222 238 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 541 584 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 358 384 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 318 334 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 311 340 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 541 641 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 428 461 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 619 641 - -
Cca07g02253 950 Pfam Domain of unknown function (DUF4378) 779 930 IPR025486 -
Cca07g02253 950 Coils Coil 687 707 - -
Cca07g02253 950 PANTHER LONGIFOLIA PROTEIN 759 949 - -
Cca07g02253 950 PANTHER LONGIFOLIA PROTEIN 1 759 - -
Cca07g02253 950 MobiDBLite consensus disorder prediction 429 461 - -
Cca07g02253 950 PANTHER LONGIFOLIA PROTEIN 759 949 IPR033334 GO:0051513
Cca07g02253 950 PANTHER LONGIFOLIA PROTEIN 1 759 IPR033334 GO:0051513
Cca07g02253 950 MobiDBLite consensus disorder prediction 180 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02253 Cca-Chr7 50877858 50883106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02253 142 938 TRM (TON1 Recruiting Motif) Superfamily AT1G74160 32.546 4.78e-80 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02253 - - gmx:102660880 1385.93