Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02251 ATGATTAAGAGCCCAAAAGAAGCAGATTTTTCATTAAAACAAGAGGGCCATCATTCTAACTCAAGTGATCATGAAAAGGCAAAGGCTTCATCAAGCTCAGCAGCACAATGGCCAAGACTGAAGGATCCAAGGATTGTGCGAGTGTCTCGAGCCTTTGGAGGGAAAGACAGACATAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGGAGGGTGAGGCTATCAGTACCAACCGCCATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCTAGCAAAGTTGTTGATTGGTTGCTCAATGCAGCTAAGCATGAAATTGATGAACTTCCACCACTTCCCAATATTCCTTCAGTGAATAACTTCACCCTTGGTTATCCATCTGCTGTTACTTCTAATGAAGCTACCACCTCTCATTCTCAGCCTAATGAACAACTTCTTAATATCAATAGGAGCATTCAGTGGGAAGGTTCAAGTCAAAATTCTTTCTGGAAACTGAAGCCTAAAGAAGTTTCAGGAGAAATGGTTAGCCCTGAGAAAGCATTAAGTTGGATAAATAGAAGTGAAGAGGATAGGCAAGGAAGCAATAATGAAGGTCCTGGTACTGCGAATGTTATACCAAATAATCTCTCACCAAGAGCAAGTCACCCTTCATTAATGGGCTTACTGAATACCATGCCACACGGTTATCAATGGGAACCTTCTGGTGGTGATGTTTCTCATCATCAGTTGGGAAACAATGGATTTTCAAACCAAACAGACACACATGGCATTAATGTTGTGCCTTTCCCAACATCAGCATTGTCTTTATCAACTGGGAATTCTCAAATTCTGCTTTGTCCTCCAGGAGCAACACAGCCATATTTCTCTTCACATGTTACAGCAATGGACATGGATCCGAGACAAATTAACCATTATCAGATGTTGAGTTCAGCTTCTCAAAATCCATTAACGAGTTCTCTCAACCACTCTTTCAGCTTGGCTATGATGACTCATAGACCTCTCAACTCACCCAACAGCAGCAAAAGCCCTTCCCTCAAAGACCAGGATTTCCCTTCCAAGTGA 1071 0.423 MIKSPKEADFSLKQEGHHSNSSDHEKAKASSSSAAQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPNIPSVNNFTLGYPSAVTSNEATTSHSQPNEQLLNINRSIQWEGSSQNSFWKLKPKEVSGEMVSPEKALSWINRSEEDRQGSNNEGPGTANVIPNNLSPRASHPSLMGLLNTMPHGYQWEPSGGDVSHHQLGNNGFSNQTDTHGINVVPFPTSALSLSTGNSQILLCPPGATQPYFSSHVTAMDMDPRQINHYQMLSSASQNPLTSSLNHSFSLAMMTHRPLNSPNSSKSPSLKDQDFPSK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02251 356 Pfam TCP family transcription factor 54 176 IPR017887 -
Cca07g02251 356 MobiDBLite consensus disorder prediction 1 25 - -
Cca07g02251 356 ProSiteProfiles TCP domain profile. 54 112 IPR017887 -
Cca07g02251 356 PANTHER TRANSCRIPTION FACTOR TCP2-LIKE 1 350 - -
Cca07g02251 356 MobiDBLite consensus disorder prediction 197 215 - -
Cca07g02251 356 MobiDBLite consensus disorder prediction 1 38 - -
Cca07g02251 356 MobiDBLite consensus disorder prediction 191 215 - -
Cca07g02251 356 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 1 350 IPR005333 GO:0003700
Cca07g02251 356 MobiDBLite consensus disorder prediction 333 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02251 Cca-Chr7 50858301 50859371 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02251 37 126 TCP Transcription Factor Family AT3G02150 81.111 1.56e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca07g02251 TCP 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02251 - - var:108327895 589.341