Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02243 ATGGCTTCAAATACTGGCAGTAAAACAAGTGAGATATTTCAAGGTCAAGTTCTCTTGTACAGAAATTTGTATGgcctagtagacgctatgtgtcttaaatggatggctgagcttggcattccagacataatccataaccatggtcaacccatcacgtttccagagttggtgtcaactctacaagttccaccaactaaagttagtggtgtccagagtctcatgcactacctagcacacaaaggtttctttgagatagtaagaatccatgacaacgtagaagaaaaggaagcatatgctctcactgctgcatcagagcttcttgtcaaaggcagtgacctttgtctagcaccaatggttgagtgtcttcttaacccaacttttgcagattcattccatcagttgaagaagtggacttatgaggatgatctcacactatttaatatctccttaggatcacctttgtgggactttcttaacaaaaaccccgcatttaacaagttattcaatgaagcaatggctagtgattctcagatgatgaacttggcgttgagagattgcaaggcgtttgaaggactggaatccattgtggatgttggtggtggaactggaatcacagccaagattatctgtgagacatttcctaacttgaaatgcattgtgttggatcgtccacacgttgtagagaacttgtcaggaagaaacaatttgacatatgttggtggggacatgtttaaatctattcccaaggctgatgcagttctatttaagAGTTTCACTGATCACAGTCACAGGTTGCTTTCGCACACCCCTTTTTTCGTGCGCAAACTGTTCCCGTTGGTCTTTCTTTCCCTCTTCACTGCAACCCCTGTTTTCACACTGTGCCATCATCTCCACAATCCAAAGCATTCCCAGATGGCCTTGCAAACAGCTACTCCTCCAACTACTCCCAGTGCCCAAGTTGTTGGTAATGCATTTGTTGAGCAGTATTACCATATTCTTCACCATTCACCAGATTTGGTCTATCGGTTTTACCAGGATTCTAGTGTGATAAGCCGTCCTGATTCCAATGGTGTGATGACATCAGTTACAACCATGAAAGGCATTAATGAGAAGATTCTTTCGCTAAATTTCAAGGAATTTAAAGCAGAGATAAAAACGGCAGATGCTCAAAAGTCATACAAGGAAGGAGTGACTGTGCTGGTGACTGGATGCTTGACTGGCAAGGATAACATGAGAAGAAAATTCGCGCAGTCATTCTTTCTCGCGCCACAAGATAATGGCTATTTTGTTCTTAATGATGTTTTTAGGTATGTAGAAGACCATGAACCATCAGAACTGCCTCCAGTTAGTGGAGATGGTGATGCAGCTGCTGTTACTGTAACCCCAGAGTTGTATTCATGCTGTTCTCATTTGTTTACAGAACCCAGTCATGTTGCTGATTCTTCTGCGCCAGATTCCACAAATTCTCATGCGAACAAGGGTCAAATTGTTGCGGAGAATGCTTATGAGCCATCTAATCATCATGAGAGACAGATACCTGTTGAAAATGAAGACAATGTGGAACCCCGTTTTCAGTCTAATGGTAATGATGATTCTCAGGCCACAGAACTGGCTTCTTCAGCTCAAGAGGACGCACCAAAGAAGTCTTATGCATCAATTGTAAAAGTCCAAAAAGGGAGTTCGGGACCAACTAAAGTCTATGTGCCTACTAATACTGTAAAGTCAGGGCCTAACAAAACTGAGAGCCAGGTAACTGAGTCGGTAGAATCTGCTGAAGTGCCTGATGCTGCTTTGGATAGTGTTAACGACCCTGAAAGTAGTGATGCTCATGAGGAAGTTGAGGGGCACTCCATTTACATTCGAAATTTGCCTTTAAATGTGACGGTTGCTCAATTGGAAATGGAGTTTAATAAATTTGGACCCATCAAACCGGGGGGCATCCAAGTCAGAAGTAATAAGCAGCAAGGATACTGTTTTGGCTTTGTTGAGTTCCTATCTCTAAATTCAATGAATAGTGCAATTCAGGCTTCACCTATTCCTGTTGGGGGGCGTCAAGCTGTAGTCGAGATAAAGAGAACCACTACACGAGTTGGCAGTGGCAGTGGCAGTGCCAGTACCGGAAGACCTAGAATCCCACCCGGAAGGAGTGGGTTACGAAGTGACTCTTTCAGGGGTCGTGGGAATTATGGAGGCGGTCGGGGCTATGGTCGAAATGATTTTGGAAGCCGTGGTGGCGACTTTTCTGGTAGAGGTCGCGGTCATGGAGAAGGTTATCACCAAGGGAGAGGGAGAGGCGGCCGGTCAAGTGGACAAAAACAAAATGCTGTTTCCAACTGA 2337 0.3132 MASNTGSKTSEIFQGQVLLYRNLYGLVDAMCLKWMAELGIPDIIHNHGQPITFPELVSTLQVPPTKVSGVQSLMHYLAHKGFFEIVRIHDNVEEKEAYALTAASELLVKGSDLCLAPMVECLLNPTFADSFHQLKKWTYEDDLTLFNISLGSPLWDFLNKNPAFNKLFNEAMASDSQMMNLALRDCKAFEGLESIVDVGGGTGITAKIICETFPNLKCIVLDRPHVVENLSGRNNLTYVGGDMFKSIPKADAVLFKSFTDHSHRLLSHTPFFVRKLFPLVFLSLFTATPVFTLCHHLHNPKHSQMALQTATPPTTPSAQVVGNAFVEQYYHILHHSPDLVYRFYQDSSVISRPDSNGVMTSVTTMKGINEKILSLNFKEFKAEIKTADAQKSYKEGVTVLVTGCLTGKDNMRRKFAQSFFLAPQDNGYFVLNDVFRYVEDHEPSELPPVSGDGDAAAVTVTPELYSCCSHLFTEPSHVADSSAPDSTNSHANKGQIVAENAYEPSNHHERQIPVENEDNVEPRFQSNGNDDSQATELASSAQEDAPKKSYASIVKVQKGSSGPTKVYVPTNTVKSGPNKTESQVTESVESAEVPDAALDSVNDPESSDAHEEVEGHSIYIRNLPLNVTVAQLEMEFNKFGPIKPGGIQVRSNKQQGYCFGFVEFLSLNSMNSAIQASPIPVGGRQAVVEIKRTTTRVGSGSGSASTGRPRIPPGRSGLRSDSFRGRGNYGGGRGYGRNDFGSRGGDFSGRGRGHGEGYHQGRGRGGRSSGQKQNAVSN 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02243 778 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 113 259 IPR029063 -
Cca07g02243 778 MobiDBLite consensus disorder prediction 503 517 - -
Cca07g02243 778 CDD NTF2 317 439 IPR018222 -
Cca07g02243 778 ProSiteProfiles Nuclear transport factor 2 domain profile. 321 437 IPR018222 -
Cca07g02243 778 Pfam Nuclear transport factor 2 (NTF2) domain 321 437 IPR002075 -
Cca07g02243 778 Pfam O-methyltransferase domain 131 263 IPR001077 GO:0008171
Cca07g02243 778 SUPERFAMILY "Winged helix" DNA-binding domain 9 111 IPR036390 -
Cca07g02243 778 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 256 IPR016461 GO:0008168
Cca07g02243 778 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Cca07g02243 778 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 305 777 IPR039539 -
Cca07g02243 778 SUPERFAMILY RNA-binding domain, RBD 606 699 IPR035979 GO:0003676
Cca07g02243 778 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 616 693 IPR000504 GO:0003723
Cca07g02243 778 Gene3D - 574 708 IPR012677 -
Cca07g02243 778 MobiDBLite consensus disorder prediction 693 778 - -
Cca07g02243 778 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 305 777 - -
Cca07g02243 778 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 618 676 IPR000504 GO:0003723
Cca07g02243 778 MobiDBLite consensus disorder prediction 503 613 - -
Cca07g02243 778 MobiDBLite consensus disorder prediction 554 589 - -
Cca07g02243 778 Gene3D Vaccinia Virus protein VP39 109 270 IPR029063 -
Cca07g02243 778 Gene3D - 1 107 IPR036388 -
Cca07g02243 778 Gene3D - 310 442 - -
Cca07g02243 778 CDD RRM_SF 618 689 - -
Cca07g02243 778 MobiDBLite consensus disorder prediction 520 546 - -
Cca07g02243 778 SMART rrm1_1 617 689 IPR000504 GO:0003723
Cca07g02243 778 SUPERFAMILY NTF2-like 317 438 IPR032710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02243 Cca-Chr7 50679349 50712425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02243 30 256 Monolignol Biosynthesis Gene Families AT5G54160 33.617 3.28e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02243 K24983 - gmx:100805494 750.74