Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02238 ATGTTTTCTTCTTCCTCAGTCATCAAATGGAGGTTCCACCACAAGCCCATGACGCTCCTGCGGCTATGCACACTCTCTTTGCTTCTCCTCTTCCTTTCGCTCGACGGCGTCGTTTCCTCGGATTCCGACAAATCAGTGCTCCTCCAGCTCAAGCACTCGCTCTCCGACCCTTCGGGCCTGCTTGCCACGTGGCAGCCTTCCACTCCCAACCACTGCGAGTGGTCCGGCGTGCTCTGCGACGACTCCGCCGCGCGCCGCCGCGTCGTGGCGATCAACGTCACCGGAAACGGAGGTAACCGGAAACCCCCTCCCCTGTGCTCCGATTTTGCTGAATTTCCCCTCTACGGGTTCGGAATCAGAAGGAGCTGCGAGGGTTTGGGTGGTGCATTGTTCGGGAAAGTTTCCCCTCTTTTAGGTAAACTCACCGAGCTTAGGGTTTTGTCCCTTCCCTTCAACGGCCTCGAGGGCGAGGTTCCGGAGGAAATTTGGGCCATGGAGAAGCTGGAGGTGCTTGATCTCGAGGGGAATTTGATAAGTGGGGTTCTCCCTGTGAAGTTGAAAAATCTGAGGGTTCTTAATCTAGGGTTTAATAGGGTTGTTGGCGAGATTCCGAGTTCGTGGTCTAGTGTTAAGAGTTTGGAGGTTTTGAATTTGGCTGGGAATGGGATTAACGGGTCTGTTCCGAGTTTTGTGGGGAGGTTGCGAGCGGTGTATTTATCTTTTAACTTGCTGGGTGGGGCTATTCCTTCGGAGATCGGAGAACATTGTGGTGGGAGGTTGGAGCATCTTGATTTGTCTGGCAATTTGCTTGTTGGGGGGATTCCGGGGAGTTTGGGGAATTGTAGTGAGTTGAGGACGGTTTTGTTGTATTCCAATGTGTTGGAGGATGTTATTCCGGGTGAGCTTGGGAGGCTTAGGAATCTTGAGGTGTTGGATGTGTCGAGGAACACGCTTGGCGGGCCGGTGCCGAGGGAGCTTGGCAATTGTTCTGAGTTGTCTGTGCTGGTTTTGTCTAATCTTTTCAGTCCGATTCCGGATGTGAATGGTACCGTGAGGGACTTGGGGGCGGAGCAGATGGTTTCGATGAATAGTGATGAGTTTAATTACTTCGAAGGTACGGTTCCGGTGGAGATTATGAGCCTTCCTAAGCTGAGAGTCCTGTGGGCGCCCAGGGCGAATATGGAAGGCAGTTTAATGAGCAGTTGGGGGACGTGTGGTAACTTGGAGATGCTCAATTTGGCTCAGAATGATTTCAATGGGGATTTTCCTAATCAGATTAGTAGCTGCAAGAGGCTCCATTTTCTTGATTTGAGCTCGAATAACCTTACTGGTGAGCTGGCTAAAGAACTTCCTGTGCCTTGTATGACTGTGTTTGATGTTAGTGGGAATGTATTGTCTGGCAAGATTCCTGAATTCTCTATTGGTGCTTGTCCGTCCCTTCCTTCCTGGAGCGGAAATCTGTTTGAAAATGACGATCGAGCCCTTCCATACAAATCCTTTTTTATGTCTAAGGTTCTTGGAGGGCCCCTTTTGTCAGCCGTAGGAGAAGTTGGCCGTTTCGTTTTTCACAACTTTGGCCAGAACAACTTTGCTGGCATGGAGTCATTGCCGATAGCACGTGACAGGCTGGGGAAGGGGTTGGTTTACGTAATCCTCGTTGGAGAAAACAAGTTGCCAGGACCGTTTCCTACTAATTTATTTGAGAAATGTGATGGGTTAAAGGCGCTGCTTTTGAATGTCAGTTATACTATGTTATCTGGTCAGATTCCTTCCAAGTTTGGTAGATTGTGCGGGTCATTGAAATTATTGGATGCATCTGGTAATCAGATTACAGGGCCAATCCCCGCTGGTTTGGGGGATATGATCTCTCTTGTTTCTCTGAACCTAAGTCGGAACCATTTACAAGGTCAGATTCCCATCAGCCTTGGCCAGTTGAAGGATCTGAAGTTTCTCTCTTTGGCTGACAATAACTTAAGTGGCTCCATCCCTACCAGCCTTGGGCAATTTACACTGTCAGCATTCAATGTGTCGTTCAATAACTTATCTGGATCCTTGCCTTCAAATAGTAACTCAATAAAATGCAGCAGTGCTGTTGGGAATCCATTTTTGCGCTCTTGCAATGAAGTTTCTTTAACTGTGCCATCATCAGACCAAGGGCTGGTTGATAATTCTAGTTCTTATACTGCTGCACCACCAGAAGCTACGAGCAAGAAGGGTGGGAATGGTTTCAATTCTATTGAAATAGCATCTATAACTTCTGCATCAGCCATTGTTTCTGTTCTTCTAGCCCTGATCATCCTTTTTATTTATACACGGAAGTGGAACCCTAAGTCCAGGGTTGTTGGGTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTTCCATTGACATTTGAAAATGTTGTCCGTGCCACAGGAAATTTCAATGCTGGCAACTGCATTGGGAATGGGGGATTTGGAGCAACCTATAAGGCTGAGATAGTACCTGGAAACCTAGTGGCAATAAAACGTCTTGCAGTTGGACGATTCCAGGGTGTTCAACAATTCCATGCAGAGATTAAGACCCTCGGAAGGCTTCGCCATCCAAATCTCGTCACTTTGATTGGTTATCATGCCAGTGAGACAGAGATGTTTCTCATATACAACTATTTGCCAGGTGGTAATCTGGAGAAGTTTATTCAAGAGAGGTCCTCCAGGGCTGTGGATTGGAGGATTCTTCACAAGATTGCATTGGATATAGCTCGTGCACTTGCATACCTGCACGATCAGTGTGTACCTCGTGTTCTTCATCGTGATGTCAAGCCCAGTAATATCTTGCTAGATGATGATTATAATGCTTATCTATCTGACTTTGGATTGGCTAGACTTCTGGGAACCTCAGAAACTCATGCTACCACTGGCGTAGCAGGAACATTTGGCTATGTTGCTCCTGAATATGCCATGACTTGTCGTGTTTCCGACAAGGCTGATGTGTATAGCTATGGTgtagtgcttctggagttgctctcagacaagaaggcattggatccttcattttcttcatttgggaatggctttaACATAGTAGCATGGGCATGCATGCTACTGCGACAAGGCCAGGCAAAGGACTTCTTCGCCGCCGGCTTATGGGATGCTGGACCTGAAGATGATTTGGTAGAGGTCCTACACTTGGCTGTTGGTTGCACGGTTGACTCTCTCTCAACCAGACCTTCAATGAAACATGTTGTGCGGCGGCTGAAGCAACTTCAACCCCCATCATGCTAG 3270 0.467 MFSSSSVIKWRFHHKPMTLLRLCTLSLLLLFLSLDGVVSSDSDKSVLLQLKHSLSDPSGLLATWQPSTPNHCEWSGVLCDDSAARRRVVAINVTGNGGNRKPPPLCSDFAEFPLYGFGIRRSCEGLGGALFGKVSPLLGKLTELRVLSLPFNGLEGEVPEEIWAMEKLEVLDLEGNLISGVLPVKLKNLRVLNLGFNRVVGEIPSSWSSVKSLEVLNLAGNGINGSVPSFVGRLRAVYLSFNLLGGAIPSEIGEHCGGRLEHLDLSGNLLVGGIPGSLGNCSELRTVLLYSNVLEDVIPGELGRLRNLEVLDVSRNTLGGPVPRELGNCSELSVLVLSNLFSPIPDVNGTVRDLGAEQMVSMNSDEFNYFEGTVPVEIMSLPKLRVLWAPRANMEGSLMSSWGTCGNLEMLNLAQNDFNGDFPNQISSCKRLHFLDLSSNNLTGELAKELPVPCMTVFDVSGNVLSGKIPEFSIGACPSLPSWSGNLFENDDRALPYKSFFMSKVLGGPLLSAVGEVGRFVFHNFGQNNFAGMESLPIARDRLGKGLVYVILVGENKLPGPFPTNLFEKCDGLKALLLNVSYTMLSGQIPSKFGRLCGSLKLLDASGNQITGPIPAGLGDMISLVSLNLSRNHLQGQIPISLGQLKDLKFLSLADNNLSGSIPTSLGQFTLSAFNVSFNNLSGSLPSNSNSIKCSSAVGNPFLRSCNEVSLTVPSSDQGLVDNSSSYTAAPPEATSKKGGNGFNSIEIASITSASAIVSVLLALIILFIYTRKWNPKSRVVGSTRKEVTVFTDIGVPLTFENVVRATGNFNAGNCIGNGGFGATYKAEIVPGNLVAIKRLAVGRFQGVQQFHAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSSRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDYNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLRQGQAKDFFAAGLWDAGPEDDLVEVLHLAVGCTVDSLSTRPSMKHVVRRLKQLQPPSC 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02238 1089 ProSiteProfiles Protein kinase domain profile. 810 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02238 1089 MobiDBLite consensus disorder prediction 717 737 - -
Cca07g02238 1089 ProSitePatterns Protein kinases ATP-binding region signature. 816 838 IPR017441 GO:0005524
Cca07g02238 1089 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 670 1088 - -
Cca07g02238 1089 Pfam Leucine rich repeat N-terminal domain 41 80 IPR013210 -
Cca07g02238 1089 Pfam Leucine Rich Repeat 259 281 IPR001611 GO:0005515
Cca07g02238 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Cca07g02238 1089 Gene3D Ribonuclease Inhibitor 39 233 IPR032675 -
Cca07g02238 1089 SUPERFAMILY Protein kinase-like (PK-like) 792 1081 IPR011009 -
Cca07g02238 1089 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 19 669 - -
Cca07g02238 1089 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 670 1088 - -
Cca07g02238 1089 CDD STKc_IRAK 816 1084 - -
Cca07g02238 1089 Gene3D Ribonuclease Inhibitor 504 712 IPR032675 -
Cca07g02238 1089 Gene3D Ribonuclease Inhibitor 234 350 IPR032675 -
Cca07g02238 1089 SMART serkin_6 810 1088 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02238 1089 Gene3D Phosphorylase Kinase; domain 1 773 885 - -
Cca07g02238 1089 Gene3D Ribonuclease Inhibitor 351 487 IPR032675 -
Cca07g02238 1089 Pfam Protein kinase domain 813 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g02238 1089 Gene3D Transferase(Phosphotransferase) domain 1 886 1086 - -
Cca07g02238 1089 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 669 - -
Cca07g02238 1089 SUPERFAMILY L domain-like 41 340 - -
Cca07g02238 1089 SUPERFAMILY L domain-like 234 687 - -
Cca07g02238 1089 SMART LRR_typ_2 621 645 IPR003591 -
Cca07g02238 1089 SMART LRR_typ_2 186 210 IPR003591 -
Cca07g02238 1089 SMART LRR_typ_2 305 329 IPR003591 -
Cca07g02238 1089 SMART LRR_typ_2 231 255 IPR003591 -
Cca07g02238 1089 SMART LRR_typ_2 141 165 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02238 Cca-Chr7 50618932 50622569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02238 24 1089 Receptor kinase-like Gene Family AT3G02130 60.935 0.0 1284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Cca07g02238 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02238 - - gmx:100803891 1826.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02238 07 50618932 50622569 Cca07g02238 07 50618932 50622569 ECH