LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca07g02236	ATGGGGCAAAAACAGATCCTTGCTCATGTGGTGATTTTGTTGCTTATGGTCCTAGTTGGGGCCAAACTAGAAGGAGGAGAAGGTGCTGATAGGATTTTGGAACTCCCTGGTCAGCCAAAGGTCTCATTTCAGCAATTTTCTGGCTATGTTACTGTCAACAAGGTTGCTGGTAGAGCTCTCTTTTACTGGCTCACTGAAGCTGCCAAAAATCCTCTCACCAAGCCTTTGGTCATTTGGCTCAATGGAGCATCGGAAGAGATTGGCCCATTTAGAATAAACAAAACAGCTTCTGGGCTATACATTAACAAGTTCTCATGGAACACAGTGGCCAACCTCTTGTTCTTGGAAGCTCCGGCCGGCGTGGGATTCTCCTACACCAACCGCTCCTCCGACCTCCTCAACACCGGCGACCGCCGCACCGCTCAAGACTCTCTGGAATTTGTTATCCAATGGCTAGAACGATTCCCGCGTTACAAAAATCGGGAACTTTATATCACTGGAGAGAGCTATGCAGGCCATTATGTTCCTCAATTAGCCAAAGAAATCATGACCTATAACGAAAAAGCCAAGCACCCCATCAATCTCAAAGGAATAATGGTAGGAAATGCAGTGACAGACAACTACTATGATAACTTGGGAACAGTTACGTACTGGTGGAGCCATGCTATGATCTCGGATCAGACTTATCGGCAACTGATGAGTACATGTGATTTTCACCGGCAGAAGGAATCTGATGAGTGTGAGTCTGTATATAGCTATGCCATGGATCAAGAGTTTGGTAACATTGATCAGTACAACATCTATGCTCCTCCATGCAATAACTCCGATGGTAGCTCTGCCACACGCCGCACCATGCGCTTACCTCACCTTCCCCGTCTGGCTTTTAGGCAATGGTCTGGCTATGATCCATGTACGGAAAAGTATGCAGAGATTTACTACAACAGGCCTGATGTGCAGAAAGCACTTCATGCTAACAAAACTGGCATTCCTTATAAGTGGACTGCTTGCAGTGAGGTTTTGAATCGTAACTGGAATGATACAGATGTATCTGTTCTTCCAATTTATAGAGAGTTGATTGCTCACGGAGTAAGAGTTTGGGTATTCAGTGGGGACGTGGATTCGGTGGTGCCTGTCACAGCAACAAGATATGCCCTTGCACAGCTTAAGCTATCAACTAAAATACCATGGTATCCTTGGTATGTCAAAAATCAGGTTGGAGGGTGGACAGAGGTGTACGAAGGGGTAACATTTGCGACAGTGAGAGGAGCAGGGCATGAAGTGCCACTATTCAAGCCAAGAGCAGCCCTTCAGTTATTCACATCATTCCTTGCAGGAAAGCCTCTTCCCAAGTCCTAA	1356	0.4617	MGQKQILAHVVILLLMVLVGAKLEGGEGADRILELPGQPKVSFQQFSGYVTVNKVAGRALFYWLTEAAKNPLTKPLVIWLNGASEEIGPFRINKTASGLYINKFSWNTVANLLFLEAPAGVGFSYTNRSSDLLNTGDRRTAQDSLEFVIQWLERFPRYKNRELYITGESYAGHYVPQLAKEIMTYNEKAKHPINLKGIMVGNAVTDNYYDNLGTVTYWWSHAMISDQTYRQLMSTCDFHRQKESDECESVYSYAMDQEFGNIDQYNIYAPPCNNSDGSSATRRTMRLPHLPRLAFRQWSGYDPCTEKYAEIYYNRPDVQKALHANKTGIPYKWTACSEVLNRNWNDTDVSVLPIYRELIAHGVRVWVFSGDVDSVVPVTATRYALAQLKLSTKIPWYPWYVKNQVGGWTEVYEGVTFATVRGAGHEVPLFKPRAALQLFTSFLAGKPLPKS	451

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca07g02236	451	Gene3D	alpha/beta hydrolase	27	274	IPR029058	-
	Cca07g02236	451	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	19	450	IPR001563	GO:0004185\|GO:0006508
	Cca07g02236	451	ProSitePatterns	Serine carboxypeptidases, histidine active site.	415	432	IPR033124	GO:0004185
	Cca07g02236	451	Gene3D	-	304	341	-	-
	Cca07g02236	451	SUPERFAMILY	alpha/beta-Hydrolases	34	449	IPR029058	-
	Cca07g02236	451	Pfam	Serine carboxypeptidase	37	444	IPR001563	GO:0004185\|GO:0006508
	Cca07g02236	451	Gene3D	-	351	445	-	-
	Cca07g02236	451	ProSitePatterns	Serine carboxypeptidases, serine active site.	165	172	IPR018202	GO:0004185
	Cca07g02236	451	PRINTS	Carboxypeptidase C serine protease (S10) family signature	115	125	IPR001563	GO:0004185\|GO:0006508
	Cca07g02236	451	PRINTS	Carboxypeptidase C serine protease (S10) family signature	151	176	IPR001563	GO:0004185\|GO:0006508
	Cca07g02236	451	PRINTS	Carboxypeptidase C serine protease (S10) family signature	415	428	IPR001563	GO:0004185\|GO:0006508
	Cca07g02236	451	PRINTS	Carboxypeptidase C serine protease (S10) family signature	102	114	IPR001563	GO:0004185\|GO:0006508
	Cca07g02236	451	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 25	19	450	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca07g02236	Cca-Chr7	50581664	50588102	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca07g02236	309	448	Calmodulin-binding Proteins	AT2G22960	31.915	1.13e-16	76.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca07g02236	K16297		-	gmx:100807680	875.93