Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02235 ATGCTTATTCTGTCCTTTTCCAGATCTTGCACACCATTTAATTCTTCTGCTTCTTCTTCACTCAGAATTTTGTGGGGGTGCTCCTGCTATCCAGGAAGTGAAGGCATAAGGTGGTTTCTCTTCTTACCCATATGCACTTTTGCTGTTGAAATTGAGGAGTCTGAGTCTGTGATTGGGGAGCTAGAAAGGGAGGAGAACTTGATTGCTGCAGTAAGGAATATTGTGAAGGCATTAGGGCCAAATAAGACCTTAACTAGTGATGCCAAGAAAGTACTAGCAGATCTTGGCACTAGATTGTCCTCCATGTCCTTACCTAGTGAGAAGGAGGAGGGGAAACTAGGGCatgggggggatgatggtgatgatcatgttggtggtggtgaccatgatgttgatgatgatgatcaagaggagggtgttagtgcTATTGAAGAAAGGCTTAGTGTGATTCAGGAGAAAATAATGAGATGGGAGGAAGATCAGTCAATGATTTGGGATTTGGGACCTGAGGAAGCATCTGAGTATCTCAATGCTGCTAATGAAGCACGCCGTTTGATCGAGAAGTTGGAAAGTTTGCATTTGAAGAAAGAGGATCAAGAGTACAAGTTTATGCATAGGGCTTATAGTGTGCTTCAAACAGCTATGGCGCGGCTTGAAGAAGAATTCAGGAACTTGCTTATCCAGAACAGGCAACCTTTTGAGCCTGAATACGTCTCTTTTCGATCCAGTGAAGAAGATGCTGTTGATGAGAACTCCATAGTCTCTATAGGCGATGAATCGGTGGAGGAGTCACTTCAAAGAGATAGTGTCAGCAGAGCCTCCGAGGAGCATATCATTCACTTGGTTCATCCAGCTGTGATCCCGGATCTCAGGTGTATTGCAAACTTACTTTTTGCATCTAACTATGTCCAGGAATGTTCCAATGCTTATGTCATTGTCCGGAGGGATGCCTTAGATGAGTGCCTCTTCATTCTTGAAATGGAAAGGCTCAGCATCGAGGATGTCCTTAAAATGGAGTGGGGTAATTTGAATTCAAAAATCAAAAGATGGATTTGGGCTGTGAAAATCTTTGTTAGGGTGTATCTTGCAAGTGAGAGGTGGCTTAGTGACCAGATTTTTGGGGAGGGTGAGCCTGTTGGTCTAGCTTGTTTTGTTGATGCATCAAAGGCTTCGATATTGCAGCTTCTGAATTTCGGTGAAGCCATGTCTATTGGCCCTCACCAACCTGAGAAACTGTTCCGCGTTCTTGACATGTATGAGGTTCTAGCTGACCTTATGCCCGACATTGATGTTTTGTATTCAGATGAGGTTGGTTCGTCGGTTAAGATTGAATGTCACGAGGTTCTGAAGAGATTAGGCGATTGTGTGAGGGCAACATTTCTTGAATTTGAAAATGCCATTGCAACAAATGTATCATCAACCGCTTTTGTTGGTGGTGGCATTCATCCTTTGACAAAATATGTTATGAATTATCTTAGAACCCTTACTGACTACAGTGACATACTCAATCTGCTTCTGAAGGACCAAGAAGAAGAGGATGGCATTTCATTGTCGCCTGACATGAGCCCTGGTACAGAAGAAGATAGCAGAAGTCAGGGATCTCCGAGTAGAGTTTCCTCAATGGCCCTCCACTTCCGATCAATCGCTTCAATCTTGGAGAGCAACCTTGAGGAGAAGTCCAAGTTATACAAAGAGTTATCCTTGCAGCATTTGTTCTTAATGAACAACCTACATTATATGGCTGAAAAGGTTAAGGGGTCTGAACTCAGGCTCGTATATGGAGATGAATGGATTCGAAAGCGCAACTGGAAGTTTCAGCAGCATGCAATGAAATATGAGAGAGCTAGTTGGAGTTCTATTCTCAACTTGCTTAAGGATGAGGGAATTCATGTTCCGGGTACAAATTCTGTCTCAAAAAGTCTTCTTAAAGAGAAGCTTCGAAGCTTCTACTTCGGCTTCGAGGATGTTTACAGAATCCAGACAGCTTGGGTTATCCCAGATATTCAGCTTCGTGACGATTTGCGGATTTCTCTATCCCTCAAAGTGATCCAAGCTTATAGGACATTTGTTGGAAGGCATAATAGTCACATAAGTGACAAAAACATTAAGTACAGTGCTGATGATTTACAAAACTACCTTATGGATTTCTTTGAAGGGTCTCAAAAGTGTTTGCAAAATCCCCATAGGAGCACAGTTTTAACTTGCTTAGAACTTCAAGTTATGTTGGAGGCACAAGAGAAAGACCAAAAACCAAGTCAAATAACCGTGCAAGGCTGGCCAACTTTTGCCATGTTTGATGATGACAGAAGATCAAGGGTGAGCCAGTATTCCATGTTGTGCTGCAAGTTAAGACCTCCTGCAGAACTTCACACACCTGAGAAGAGAACAGAACCTGAACCCCCACTGTGCTTTTCAAGGGTGGGTTTAGCAATGGCTTTCTTAAATAAAATTGGAAGTCTGCTCAAGAATTCTGCTGTCAAGCATATCAATCAAGATTTTTCTGTGTCTACTCCTTCAATTTTCCAAGCAATTAGATCCATGTCATCTGCAAAGCTTTTTGTTGGAGGTATTTCTTACAGCACTGATGATATGAGTCTGCGAGAGGCTTTTGGCCGCTATGGAGAAGTAATTGACGCCAAAGTTATTACGGATCGCGAAACAGGCAGGTCAAGAGGTTTTGCCTTCATAACTTATGCAACCAGTGAGGATGCATCTTCTGCCATTCAGGGCATGGATGGCCAGGATCTTCATGGGCGGAGGATACGGGTGAATTATGCTACAGAAAGGTCACGACCAGGGTTTGGTGGTGGTGgcggcggctatggtggaggtggctctggtggcagtggcggatatggtggcggcggctatggcggtggtggtggcagctatggAAGAGGTGGCTATGGAGGTAATGACAGTAGGGGTGGAAGTTATGGAAGTGGTGGTTATGGTGTTACGAGCAGCTATGGCAGTGGCAATGCTGAAACTAGTTACACCGGTGGTGCTGATGCTAGTAATTACCAATTCAATGAAAATTCTGGTGGGGATCTTGACTCAGGTAGCGGCAAGTCTGGTTTGGGATATGATGGTCAATTTGGTAGCAACCAAAATGACGGAACAGGCGCTGACAATGATGAATTCATTGAGCCACTTGAAGAAAATGTGAAGGAGAACAATGATGACTATGCTCAGACCCGGGGGTGA 3207 0.4113 MLILSFSRSCTPFNSSASSSLRILWGCSCYPGSEGIRWFLFLPICTFAVEIEESESVIGELEREENLIAAVRNIVKALGPNKTLTSDAKKVLADLGTRLSSMSLPSEKEEGKLGHGGDDGDDHVGGGDHDVDDDDQEEGVSAIEERLSVIQEKIMRWEEDQSMIWDLGPEEASEYLNAANEARRLIEKLESLHLKKEDQEYKFMHRAYSVLQTAMARLEEEFRNLLIQNRQPFEPEYVSFRSSEEDAVDENSIVSIGDESVEESLQRDSVSRASEEHIIHLVHPAVIPDLRCIANLLFASNYVQECSNAYVIVRRDALDECLFILEMERLSIEDVLKMEWGNLNSKIKRWIWAVKIFVRVYLASERWLSDQIFGEGEPVGLACFVDASKASILQLLNFGEAMSIGPHQPEKLFRVLDMYEVLADLMPDIDVLYSDEVGSSVKIECHEVLKRLGDCVRATFLEFENAIATNVSSTAFVGGGIHPLTKYVMNYLRTLTDYSDILNLLLKDQEEEDGISLSPDMSPGTEEDSRSQGSPSRVSSMALHFRSIASILESNLEEKSKLYKELSLQHLFLMNNLHYMAEKVKGSELRLVYGDEWIRKRNWKFQQHAMKYERASWSSILNLLKDEGIHVPGTNSVSKSLLKEKLRSFYFGFEDVYRIQTAWVIPDIQLRDDLRISLSLKVIQAYRTFVGRHNSHISDKNIKYSADDLQNYLMDFFEGSQKCLQNPHRSTVLTCLELQVMLEAQEKDQKPSQITVQGWPTFAMFDDDRRSRVSQYSMLCCKLRPPAELHTPEKRTEPEPPLCFSRVGLAMAFLNKIGSLLKNSAVKHINQDFSVSTPSIFQAIRSMSSAKLFVGGISYSTDDMSLREAFGRYGEVIDAKVITDRETGRSRGFAFITYATSEDASSAIQGMDGQDLHGRRIRVNYATERSRPGFGGGGGGYGGGGSGGSGGYGGGGYGGGGGSYGRGGYGGNDSRGGSYGSGGYGVTSSYGSGNAETSYTGGADASNYQFNENSGGDLDSGSGKSGLGYDGQFGSNQNDGTGADNDEFIEPLEENVKENNDDYAQTRG 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02235 1068 Gene3D Exocyst complex component Exo70 153 725 - -
Cca07g02235 1068 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 70 725 - -
Cca07g02235 1068 CDD RRM_HP0827_like 851 926 - -
Cca07g02235 1068 Coils Coil 549 569 - -
Cca07g02235 1068 MobiDBLite consensus disorder prediction 1010 1068 - -
Cca07g02235 1068 Pfam Exo70 exocyst complex subunit 348 713 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cca07g02235 1068 MobiDBLite consensus disorder prediction 108 130 - -
Cca07g02235 1068 Gene3D - 789 946 IPR012677 -
Cca07g02235 1068 Coils Coil 208 228 - -
Cca07g02235 1068 MobiDBLite consensus disorder prediction 103 139 - -
Cca07g02235 1068 SUPERFAMILY RNA-binding domain, RBD 834 960 IPR035979 GO:0003676
Cca07g02235 1068 MobiDBLite consensus disorder prediction 1050 1068 - -
Cca07g02235 1068 SMART rrm1_1 851 924 IPR000504 GO:0003723
Cca07g02235 1068 MobiDBLite consensus disorder prediction 522 537 - -
Cca07g02235 1068 Coils Coil 140 160 - -
Cca07g02235 1068 Coils Coil 172 199 - -
Cca07g02235 1068 MobiDBLite consensus disorder prediction 1029 1043 - -
Cca07g02235 1068 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 852 922 IPR000504 GO:0003723
Cca07g02235 1068 SUPERFAMILY Cullin repeat-like 160 718 IPR016159 -
Cca07g02235 1068 PANTHER EXOCYST COMPLEX PROTEIN EXO70 70 725 IPR004140 GO:0000145|GO:0006887
Cca07g02235 1068 MobiDBLite consensus disorder prediction 514 537 - -
Cca07g02235 1068 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 850 928 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02235 Cca-Chr7 50564426 50577231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02235 60 729 EXO70 exocyst subunit family AT3G29400 47.668 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02235 K07195 - gmx:100799102 1211.82