Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02223 ATGGCATTTGAAGTAAGAGATGGTGTTGGTGATTGGCCTTTAGAGCTTTTTAAAGATTGTGCTTCTACAAGTGAAATTGATGGAAATACAGTTTCTTTTACATTTCAAGAGTCTCAAGAAGAACCACTGCTTGAAGCCAATAATATTTATGATGAAGTTCCTTATGAAGGGCAAATGTTTAATAGCTATGGTGAAGCTTATGAATTTTATTATGCATTTGCACGAAAAAATGGCTTTTCGATTAGACGTGAACATACTTACAAATCTAGTAAGAATCAAACTGAGGAGAATCCATTGGGTATTTATAAAAGGGAATTTGTTTGTCATCGTGCTGGTTCTGTTAAACAGCGCAAAATTATTGAAGAGGAAAGTCAAAGAAAACGGAAAAGTTCAAGATGTAATTGTGGGGCAAAAATGTTGATTAACAAAAAGACAATTGACTTTGAGGAAAAATGGGTGGTTAAATATTTTTATAATTACCACAACCATGATTTATTAGATGATAAAGAGATTCAGTTTCTTCCTGCATATCGAAACATCCCAATTGTTGATAAAAATCGTATACTGTTATTGTCAAAAGTTGGTTGCTCTGTAAGCCTCATAATAAGAGTGTTGGAGTTAGAGAAAAGGATTGATCCAGGAAATCTACCATTTTTAGAGAAGGATATTAGGAATTTTATTCAATCTGAAAGTGGTATTGATAAAGAAAATGATGCTTCAAATCTTCTCAAATTATGCAAAAGTTTGAAAGATAGAGATAATGCCTTCCAATATGATTTCACAATAGATGAAAATAACAAATTGGAGCATATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAAGCTTTCGGAGATGTGGTTGTTTTTGATACAACATATCGAATAAATCGTTATGATACGCCTCTTGGATTATGGGTTGGGGTTGATAATCATGGAAATTCAATTTTTTTTGGTTGTGTTCTATTGAGAAATGAGAAGTTTTCTTCCTTCACATGGGCTCTAAAGGTTGGTGTTGCTGTCAACATTAGAAATCAAGCTGGAGAGGAGGCAAGAATGCGTCAAAAGTACTATAATCCTCAAATTATAACAGGTTTTCCTCTTGAGGAACATGCTGCATCTATACTCACACCATATGCCTTTGAATTGCTCCAACATGAGATCCAATTATCTACAAAATATGCTGCAATTGATATTGGCAATGACTCATGCATAGTGCGACATCATACCAAAGTTAATGGAGGTCGTTCTGTCAGTTGGATAGATGAAGAAGAATCAATTCATTGCTCTTGTAAAGAATTTGAATTTTCTGGAATATTGTGTAGACATGCTATTCATGTGCTATTGATGAAAAATTATTCGTGA 1368 0.3363 MAFEVRDGVGDWPLELFKDCASTSEIDGNTVSFTFQESQEEPLLEANNIYDEVPYEGQMFNSYGEAYEFYYAFARKNGFSIRREHTYKSSKNQTEENPLGIYKREFVCHRAGSVKQRKIIEEESQRKRKSSRCNCGAKMLINKKTIDFEEKWVVKYFYNYHNHDLLDDKEIQFLPAYRNIPIVDKNRILLLSKVGCSVSLIIRVLELEKRIDPGNLPFLEKDIRNFIQSESGIDKENDASNLLKLCKSLKDRDNAFQYDFTIDENNKLEHIIWAFGDSIRAYEAFGDVVVFDTTYRINRYDTPLGLWVGVDNHGNSIFFGCVLLRNEKFSSFTWALKVGVAVNIRNQAGEEARMRQKYYNPQIITGFPLEEHAASILTPYAFELLQHEIQLSTKYAAIDIGNDSCIVRHHTKVNGGRSVSWIDEEESIHCSCKEFEFSGILCRHAIHVLLMKNYS 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02223 455 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 34 338 - -
Cca07g02223 455 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 338 IPR031052 GO:0006355
Cca07g02223 455 SMART 26again6 428 455 IPR006564 GO:0008270
Cca07g02223 455 Pfam SWIM zinc finger 424 453 IPR007527 GO:0008270
Cca07g02223 455 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 342 453 IPR031052 GO:0006355
Cca07g02223 455 ProSiteProfiles Zinc finger SWIM-type profile. 417 453 IPR007527 GO:0008270
Cca07g02223 455 Pfam MULE transposase domain 288 338 IPR018289 -
Cca07g02223 455 Pfam FAR1 DNA-binding domain 68 166 IPR004330 -
Cca07g02223 455 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 342 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02223 Cca-Chr7 50475741 50477735 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca07g02223 FAR1 8.7e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02223 - - ccaj:109802755 668.692