Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02219 ATGGTCATGTCTAGATTTTACTCTTTGGTTCCCTTTGTCTTTTTCATGGTTCTCTTTGTACCACTCTTGTCAAAAGGTCAGAACCACCATCATCTTCATCTCTACAGTCGTCGTGGTCATAATCCCAGTCCCAGTCTCGGCAGCAACTGGAAGCTTGCGCATGCAACCTTCTATGGTGACATGCAAGGTGGAGAGACAATGCAGGGTGCTTGTGGTTATGGCGATCTGTTCCAACAAGGGTATGGGCTTGAAACCACAGCCCTAAGCACAGCTCTATTCAACAATGGGGTGAGTTGTGGGGCATGTTTTGAGATCCAGTGTGTGAACGACCCCAGTTGGTGCATAAAGAACGGAGGCACAATCAAAGTAACGGCAACAAATTTCTGTCCCCCCAACTATGACCCTCCAAATTTGGACCATTGGTGCAACCCTCCAATGGAACACTTCGACTTGTCCATGAAAATGTTCACCAAAATCGCCATATACAAAGCAGGGATCATCCCAGTTCAATATCGACGTGTCCCATGCACCAAAACCGGTGGTGTCAAGTTCCAACTCAAAGGGAACCCTTATTGGCTCCTAGTTTTGATCTACAACGTTGGCAACGCTGGTGATGTTACTCAAGTTAGCATCAAAGGCTCTAAAGCTAATTGGGCTTCCATGTCACGGGCTTGGGGACAAAATTGGCTTACGGGCTCTAATTTGGTGGGCCAGAGCTTGTCGTTTTCGGTTACTACTAGTGATGGTAAAAAGTTGAATTTTGATAATGTTGTTCCTTCCAATTGGCAATTCGGACAGACCCATGAAAGTCCCCAAAACTTTTAG 825 0.4606 MVMSRFYSLVPFVFFMVLFVPLLSKGQNHHHLHLYSRRGHNPSPSLGSNWKLAHATFYGDMQGGETMQGACGYGDLFQQGYGLETTALSTALFNNGVSCGACFEIQCVNDPSWCIKNGGTIKVTATNFCPPNYDPPNLDHWCNPPMEHFDLSMKMFTKIAIYKAGIIPVQYRRVPCTKTGGVKFQLKGNPYWLLVLIYNVGNAGDVTQVSIKGSKANWASMSRAWGQNWLTGSNLVGQSLSFSVTTSDGKKLNFDNVVPSNWQFGQTHESPQNF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02219 274 Pfam Lytic transglycolase 85 171 IPR009009 -
Cca07g02219 274 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Cca07g02219 274 PRINTS Expansin signature 107 118 IPR002963 GO:0009664
Cca07g02219 274 PRINTS Expansin signature 121 131 IPR002963 GO:0009664
Cca07g02219 274 PRINTS Expansin signature 139 156 IPR002963 GO:0009664
Cca07g02219 274 PRINTS Expansin signature 156 169 IPR002963 GO:0009664
Cca07g02219 274 PRINTS Expansin signature 180 192 IPR002963 GO:0009664
Cca07g02219 274 PRINTS Expansin signature 192 213 IPR002963 GO:0009664
Cca07g02219 274 PRINTS Expansin signature 227 248 IPR002963 GO:0009664
Cca07g02219 274 PRINTS Expansin signature 256 272 IPR002963 GO:0009664
Cca07g02219 274 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 181 IPR007112 -
Cca07g02219 274 SUPERFAMILY Barwin-like endoglucanases 49 199 IPR036908 -
Cca07g02219 274 PRINTS Expansin/Lol pI family signature 49 64 IPR007118 GO:0005576
Cca07g02219 274 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Cca07g02219 274 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Cca07g02219 274 PRINTS Expansin/Lol pI family signature 164 180 IPR007118 GO:0005576
Cca07g02219 274 PRINTS Expansin/Lol pI family signature 218 232 IPR007118 GO:0005576
Cca07g02219 274 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Cca07g02219 274 Gene3D - 36 177 IPR036908 -
Cca07g02219 274 SMART dpbb_1 85 171 IPR007112 -
Cca07g02219 274 Pfam Expansin C-terminal domain 182 259 IPR007117 -
Cca07g02219 274 PANTHER EXPANSIN-A15 48 274 IPR002963 GO:0009664
Cca07g02219 274 SUPERFAMILY PHL pollen allergen 178 270 IPR036749 -
Cca07g02219 274 Gene3D - 181 274 IPR036749 -
Cca07g02219 274 PANTHER EXPANSIN-A21-RELATED 48 274 - -
Cca07g02219 274 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 191 270 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02219 Cca-Chr7 50429880 50432166 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g02219 40 274 Expansin Gene Family AT5G39270 62.553 3.00e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02219 - - gmx:100789595 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02219 07 50429880 50432166 Cca07g02219 07 50429880 50432166 ECH